1. Home
  2. Mutant Lines
  3. 13-5909-1

13-5909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18026 [Map]; Strand: c
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5909-1 - 3-prime edge 
    ATCTTGATAG TATAAGTGGC CACAATATAA TGATAGCTTT TCTTGTTTGT 
    CTACAGATTA GACTACGAGG TAGCCGAGCT GACGTGGGAG AACGGGCAAC 
    TAGGCTTGCA CGGCTTAGGT CCACCGCGAG TGACGGCTTC GTCGACCAAG 
    TACTCCACAG GCGCCGGTGG AACGTTAGAG TCGATAGTGG ACCAAGCTAC 
    TCGCCTCCCT AACCCTAAGC CCACGGATGA GCTCGTCCCG TGGTTCCATC 
    ATCGCTCCTC CAGGGCCGCG ATGGCAATGG ACGCGCTTGT CCCTTGCTCC 
    AACCTAGTAC ACGAGCAGCA GAGCAAGCCT GGTGGCGTTG GCTCCACCCG 
    GGTGGGGTCA TGTAGCGATG GTCGT

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR