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13-5926-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20169377 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5926-1 - 5-prime edge 
    GGCTAGGACT TGGGGTAAGA TTATAGCCGG TGCGTTGCTT GTCGAGATCT 
    GGCGCTGTTG CGTCGCTGTT TCTAGGGGCG GTGGTGCAAA ATGCTCGTCG 
    CCAACCAGTA CCCATTGGTG TATATTATTA ATCTTGGGTT GTTTTGGTTT 
    TCAAGATGGA GAAAGTTTTA GAAAAACAAG AAAAAGGAAG AAGATAAAGA 
    TTGAAAGATT TTGGCAGAGA AGAAGACAAA GGAAAACGGT GACAGTTTCG 
    GATTTTGCTT TGGTCTCAAT TGTTGTTATT ATCACTCTGC ATCTCAGAAT 
    GGGAGATCTG TGGAGTTTTA GTATAAAAAG ATTTTTAAAA TGGTTTTTCT 
    TTCTTTATTG TCCAGATTCC AAGTTTGGAC TCTCTCTCTC TGCTTCTTCT 
    CCTATGATTC CTCTCAAGGG TCCGATATAT AAGCCTAAAA TATTTATACT 
    GTAGCTGGAT TTTGCATTTA ATTCTTGGGA TTTCTTTTTG ATGACGCGAA 
    TGTCGAAAAC AAAAAGTATT TTTTTTTAAT TGAAGAAGTC TATTATGTGG 
    ACNATTTTCT TTTTTGGACG ATTTTCATTT TATATTTGAA AAAGTACAAT 
    TAANTGAATG ACAAGAGGAT ATTTTGATCT ATGTGATATA TCATGTTTTT 
    GAANACNATT TTCTTCTTTT ATTTANCTTT TAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20169305 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5926-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAG 
    CCCAAGAAGC TGCGTGAAGC TAGCTTTTCT ATCCGGAGGA AGTAATCCTT 
    CAACTCCCCG ACCAACTTCT AGTCCTAGCC TACGTTGTCG GACTACAGAT 
    GCTGAAACTC CCACGGCGGA ACAAACTCCG ACGCCAAGAT CGGCGACTAA 
    GAGTCCAAGA CTGTCTTTGG CCGCTATCTC TAACCCTTCT TCGCCTCGGT 
    CACCGTTAAA ACTTTCTCTG TTCCGCAACA GCTTCAAATT CAGAGTAAGA 
    AACATATTAA GCAACAGAGA GATCAAAATA ACTTATAAAG ATATGTTTTT 
    GATGGTTGGT TAACTTTTTG CAGAGTACTT GTGGAATATG TTTGAACAGT 
    GTGAAAACAG GGCAAGGGAC GGCGAAATAT ACGGCGGAGT GTTCACACGC 
    ATTTCATTTT CCTTGTATCG CCGACTATGT TCGTAAACAG GGCAAGCT

AT5G49665.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR