1. Home
  2. Mutant Lines
  3. 13-5960-1

13-5960-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3680075 [Map]; Strand: w
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5960-1 - 5-prime edge 
    NTATGNTCTC TNGCTAGCGC TCTTCAAAAT CCACGAACGA GANNATTGTA 
    CAGACGCCGN TTATCGNACN ATTGCTTGTA GGAGACTAAA GTTTCTTTAC 
    ANGATCCGGA ATAAATCACC TAAGGNTNGA TNTTTTCCTC TAGGACTCGT 
    GAAAGGTGAC AGTCATCGGA CTGGTGNNGT TTGAGATGGG ACGTGATTNN 
    AAACCGAGGC TNCTCACTCC GCTGTGGCTG TTGCCTTCGN CTNTACGGCN 
    NTGTGCNTTC TNGAGANANC AGAACGGCCG GCCTGGAAGN AGCAGTAGGA 
    TGNTGANGNT NCNGTTGGTN TAGCTTGNGG GTGTNNGGCT ACNGNNNGCT 
    NCTNGAGTNT GATTNCAANA GAAGANCGAC NTCTGAAGAC GCTAATANCA 
    GNNANGCGNN TGNNGCNGGN AGACCNCGNC CGANGATCNG AGATNAAGAA 
    NNNTACTACA CNAAAGANAC ANCTACAAAN TANNTCCTAA AGNNTTGTNC 
    NTNTCGNTGA TTTCNNGNNA CAGNGGTTAG ANNNAANAGT NAGTNNNNNC 
    GAACNNNNNG NNAGNNAAAN NTNAAANTGT GTNNNATAAN NAGATAAAAA 
    AGNTTTNNGC NAAGNACNNN NGNGANCNAG AGANNNAAAN GNGNGATNNG 
    GAGANTNAAT NNGGNANNNA GANANATAAN TNGNNCCNNG NCTANGNGNG 
    GGANNNTNNT NTNNCACANA AANAGAATTC NNAGANCAAA AAAAAANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3679957 [Map]; Strand: w
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5960-1 - 3-prime edge 
    GATAAGGATG AAAGAGGCTC TACGAGCTCG GCGACATCGA CCTCTCTGCC 
    ATATTCAAAG AGTAAGAGCA CGAGGGATAC GGCTGGATCA ATTGCAAAGA 
    GTATAAGCCG GAGAAGCACA ACGCCGATAG TGTTTTCGCA GTCTACACCG 
    CCGAAAAAAC CACCAGCTGT GGAGAAAAAG CT

AT1G11040.1

Model type
Protein coding
Short Description
HSP40/DnaJ peptide-binding protein
Computational Description
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
Link
InterPro Scan - TAIR