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13-5961-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 101490 [Map]; Strand: c
      • AT2G01150.1 - [+] show detail - RING-H2 finger protein 2B
        Distance: 0; Region: exon1 (3UTR)
      • AT2G01160.1 - [+] show detail - pre-tRNA
        Distance: -575; Region: promoter
    Flanking Genome Sequence: 13-5961-1 - 5-prime edge 
    ACGTCAATAG CAATAATGCA AAGTGTGGAA ACCAGAACAA AGTCCATAGT 
    GTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 101606 [Map]; Strand: c
      • AT2G01160.1 - [+] show detail - pre-tRNA
        Distance: -459; Region: promoter
    Flanking Genome Sequence: 13-5961-1 - 3-prime edge 
    ATTGACGTTA AAAGGTAGGT AACACAATTT ATTGTGTCGA AATTCTACAA 
    GAAAATATCA TAGCACCTCA TTTGGTAACA AACTACACTT GTATTAATTT 
    TGTTATTGTA AAGACTGTCT GTGTCTAAAG TTTATCAAAA ATATCCTATA 
    TGTAGTAATG TGAGTTGCAA ATTCGTCCAA TCTTTTAGTA ACTAGTTGTA 
    GCTCCGCTAA ATAGTTTTCG TTTTCTATAG ATCCGCCCAT GATAACACCC 
    ACATTTCAAC TTGAATAAAG TTGTACTAAG CGATCAATAC AGTATTACAA 
    GGTGTTTCTG AACATATGCT CAACTAACAG TTAACACATT ATAATACAAT 
    ATGAATAAGA CTCAGTTAAT CATTTAACAT TTCTATTTGC GAATAAGAAT 
    ATGCTCTAGT TTCGTAAACA ATGTGTACCA TATCCTTTTG AGGATTGAGG 
    TCCGTTTTGG CAGTATTCCT AACGAATT

AT2G01150.1

Model type
Protein coding
Short Description
RING-H2 finger protein 2B
Curator Summary
Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.
Computational Description
RING-H2 finger protein 2B (RHA2B); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A2A (TAIR:AT1G15100.1); Has 8536 Blast hits to 8514 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2151; Fungi - 713; Plants - 4534; Viruses - 16; Other Eukaryotes - 1122 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01160.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asn (anticodon: GTT)
Link
InterPro Scan - TAIR