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13-5977-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6450986 [Map]; Strand: c
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5977-1 - 5-prime edge 
    ATAGGGCAGC AACTAGAATT TATCTAGACT TCAACAAATC CCTTGTTCCA 
    AATACATATC TAATGAAAAA GAGTAGAAGA AGACACAATT TCATATGAGC 
    ACAAACTAAA ATGCACTTTT ATGAATGACA TGTTTATATT ATACCAGCTC 
    TTTTGGGGAG GGAACGCCAA TCACAAACGC CATGCTCGTT GATGTAAGCG 
    CCGAGCTTCT GGTCTTCCTC TGCCGTCCAC TCTCCTTTCT TCATCCCGTC 
    GACGTCGAAC CATGTCGTCC TCCCCATTTT CTCCAGCCAA CCAAACTAAA 
    AAACCAATCT AATATTGCCA CGTTTCACCA CCTCACGAGA AGACAAATTT 
    TAAACAAGTT CAATTATTTA TTTGAAAGTG TGTCTCTCTC TCCAGAAAAA 
    AAGTGAGTCT CTCTCTACAC GTTTTACTCT GTAGGATGCT CTCGAGAGAA 
    TGAGTAGTGG GATGTGTTAT TCTAATTAGG GTTATACAAT TATATAGCCC 
    CCCCCTGTTT TGGGTATTAT TATATTTCCG CCGTNGGATT TTACTTCNAA 
    TTACCANCCC GGGCCGTNGA CCACNCGGNC CCNNANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6451102 [Map]; Strand: c
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5977-1 - 3-prime edge 
    TGCCCTATGA AAATATGCGT GTATATATGT AGCAAAACAC TTGGGATATT 
    TATATTTATA TTCCATAAAC ATATAGAGAA GTGTATGCAT CTATATGTTG 
    TGTTTTTGCA AAACTGTGTT AAAACATATT TTCTTCTTCT CACTTTTTTT 
    TTNGTTTNCT TAATAAACTA ATTNGGGANC ANCNAGTTTN CANAAAGTNT 
    AAATNCNAAT NGCNGCCTAT TAATATATTN CATGTAGGTN TGTACCANCA 
    TAGTNGGATT AAAAACATCT AAAAANCATG NGTTAAGTNT ATAAAATATT 
    NAACATNGTT TTNGGTNCGN ATATATATCT TNAAAANGTT TTAAAANGAT 
    TAAAACAATA TNGAANATNC TTTCTTNGNN CTTTTTTCCC CTATTNGTNG 
    CNGAAAGTNC TCATTNGTNT TATTANAGGA CTATGAGTTA AATCATAAGG 
    GGGTNTNTTA ATATACNCNC CGAAATTTTC GGGATNGGAA ATTNGTTACN 
    TATGTAAANA TNCTNTNCTN CATGCTGAAG GGAATAGTAN AANCCATGTN 
    CTTNNAATT

AT1G18710.1

Model type
Protein coding
Short Description
myb domain protein 47
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 47 (MYB47); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1); Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0; Bacteria - 0; Metazoa - 776; Fungi - 509; Plants - 5635; Viruses - 3; Other Eukaryotes - 1752 (source: NCBI BLink).
Link
InterPro Scan - TAIR