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13-6008-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10853069 [Map]; Strand: w
      • AT4G20050.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G20050.2 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -932; Region: promoter
    Flanking Genome Sequence: 13-6008-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACT TGAGGCCTGT GAATGTAAAA CAGAGCCAAA 
    CGAAAAGTTA ATTACCTATT TGATATTACT GCATAAGCAA TAAAAAAAAC 
    TCTATATATA AGGATGGATA TTGCAAATCG AATAAATCAG ATGTAGAAAA 
    GAAGCACNTT TTAATTTGGA AAAATTGATT AAAAGTAAGA AACTCAAAAG 
    AACATGTATA TATAGAGAAT GTATGTGTAT AATGTTATCT ACAAAGAAAG 
    AAATCATGCT GTTATATGAT ATACAAATAA TAGGTTTCTC TGTTGGACAA 
    TGAAAGAGGC TTCTTCATCT TAAAAG

AT4G20050.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Curator Summary
Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.
Computational Description
QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20040.1); Has 103 Blast hits to 103 proteins in 26 species: Archae - 2; Bacteria - 18; Metazoa - 0; Fungi - 3; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20050.2

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Curator Summary
Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.
Computational Description
QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20040.1); Has 103 Blast hits to 103 proteins in 26 species: Archae - 2; Bacteria - 18; Metazoa - 0; Fungi - 3; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR