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13-6024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039838 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon7 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-6024-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAG GTGTCCTCGA TGATGCAACC GGAGGGGAGT 
    TTTCGACATT TCAGTAGAGA AGCCTCCTTC TCCGTGTTGC TGTCCTCCAC 
    GGAGACCGAG ACGTCCACTA TTGCCCATTT CTCAGGGCTC AGCTGCCGGC 
    AGCTTCTCAC GAAGTACACT TCTCTTGTGG GGACGACCGG AGTGAGCAGC 
    TGCATCTCTC CGAACATCTG CCACAGTAGT TATAAACCAT ATCCATCCCA 
    TGTATCAGCT GAGTCGTCAT TCATCAATTA TCACTATATG TATATATTGA 
    TGAGTACTCA CCAGCTGAAT GGCCCCGTCG ATCCGTGAAG GCCCTTCGCC 
    TTGCCGGATA ACATCGACCG TTGCAGCCTT TGAGATCAAG CATGCAAATA 
    TCTCTTTCCA TTGTCCCTGC GCGTTACACG TACACATCAA TTCCTTTTTA 
    TACACATAGA ATAAGTTATA GTAGCTGGTA ACAGTAATAA ATAATGGAAA 
    AGTACCACGT CCATGAAACT CTGGGCAAGT TTATGTGCGT CCATAAACAC 
    AATTCCCGCA TCTCTAGATG CTTCGATGGT TTTCCTTCCA GGAAACGAAG 
    AGGCTTGCGC TTGGGGAAAC TCCTTGAGGT ACTCATCGTA GTTGAGAATC 
    TCACGGCCAG TCTCAACGCT GCGGANCCAC ATAGGTTCGC CTGAGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039843 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon7 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-6024-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCCAACGGTC ACTCCAAGGT CACCTGGGTG GAGCACCTCG ACGTGTCTGC 
    ATCCACAGTT CAGCCTCTCT TCCGCTCCTT AGTCAACACC GGTTTGGCCT 
    TTGGGGCTCG ACACTGGGTC GCCACCCTTC AGCTCCATTG CGAACGCCTT 
    GTCTTCTTCA TGGCTACCAA CGTCCCCACC AAAGACTCTC TCGGTCCGTC 
    TATATATCCG GATC

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR