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Mutant Lines
13-6039-1

13-6039-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1239095 [Map]; Strand: w
  - AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: 34; Region: intergenic
  - AT1G04550.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
    Distance: -1280; Region: intergenic
Flanking Genome Sequence: 13-6039-1 - 5-prime edge
```
AACGCACATA TTCCGCTGAC GATCTGAGCT TTGTGTGATC TTTATTTTAT 
TGGTCTTATA TTAACTTTTA TTTTTTTTGG AAAACTATAT TTTTTAAGGA 
TCTGATCTGA TGAATTAATC AAATAGTAAA CAAAAATTAA TTTATTAATG 
TTGTGTTAAT AAATCATTTA TTTTTGTGTA TTCCTCTTCT TCTTCCTTAT 
TTTTAAAAAA TTAAAAAATG TTCTTCTTAT AATATAGTGT TTAATAGAAA 
GTGAGCTCAC ACAACAAAAT T
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 1238979 [Map]; Strand: w
- AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

TGTGCGTTGC ACACGTCCGG CTCCACCTTT CTTAGTAGAT CCTTCTGAGA 
CCATCGGCCC ACCACCACCA CCGCATACGA AACTGCATTC CACACCACAA 
ATCTTACTAA AACACGAGAA AAGTCCATTA CCTCCATCTG TGTGACGGCG 
GTTATGCNTT TTTCGTCGTC GGAGTTTTCC GTCTTGAACT CATTCCTCCC 
CCGGCAGTTG CAGCTGGAAC GCTCGCGCCA TCGTAATCAG TGCTACTTAT 
ATGGCTTGAT CCTATGTCGT ACAACGGTGG AAGCTCTGTT CGCCATCTCT 
CGAGTTTTGA TCGCAATCCT TCGATGCTAG ATTCATCGAT GCTCCATTCG 
CTGAGTATTG AACTTTCCGT TTCGTGCGAT CTATCTTTCG CCAATTTGTC 
AGCCACTTCA GATGGCGATG GTCCTAACTC CGATTCAGTT AAGATTCGTC 
TTCCAGCTAA ATTCCTCACT GGTGTACCAA AATCGTGATG AGTTCTCATC 
GGTGTAGCCA TGTAGTTTGA TCGGATCGGG GTTGATCCGA CGATGTTTGA 
TCTCATTGGA GTCGAACCAA CCATGTTAGA CCGCATAGGA GTTCGCATTG 
GAGTCGATCC AACCATGTTG GGATGCATCG GTGACATTGC GATGATGTTG 
GATCTCATAG GAGTTGATCC AACTCCGGTT AGATCTCATC GGAGTAGATG 
CGAT

AT1G04540.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04550.1

Model type: Protein coding
Short Description: AUX/IAA transcriptional regulator family protein
Curator Summary: IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem
Computational Description: indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3); Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1087; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR