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Mutant Lines
13-6043-1

13-6043-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 16155459 [Map]; Strand: c
- AT4G33625.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -737; Region: promoter
- AT4G33625.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -737; Region: promoter
- AT4G33630.1 - [+] show detail - Protein of unknown function (DUF3506)
  Distance: -44; Region: promoter
- AT4G33630.2 - [+] show detail - Protein of unknown function (DUF3506)
  Distance: -44; Region: promoter

GGGATAAACT AACAAAATCG GTTATACAGT GTGGACGATG ATGATGATAT 
GGGCTTTTGA TTGACCAAAA GGAATATGTG ACTCGTGACT GACTTATGTG 
TTATGTGGTC ATGTCCGTTT ATTAACCAAC CAAACCGCAA CGTTTATTTT 
ATTTTTGGTA TGCGGATCAA TTCGAACGGA ATGCTAATCC AAAAAGACCA 
AAATTTCTAA TTTATAGTCC AGTTTTTGAG TAAAATTTTA GCGTATTCAG 
ACTCAAATCT CTACATAATA CAAAATTTTG GAGATTATTG TAGATGAAAG 
TGAAAATTAG TAGTGTGTTA CGGCAAAAAT TGTTTGTTGT GGTCTTGGGT 
TTTGGTTTTA GAACTAGAGC TAGAGCTAGA GCTAGAGCCA GTCATATATT 
TGTTAGCCCA TTGACTTCTA ATGGGCTCTA TAGGATTATT TAACCTCACT 
AAGAGGAAGC TAGGTCGTAT CCATGAACAT GTTACATGTG ACTAGACTGG 
AGTGTTGTAA CCACTCTCCC AAGTGGTTCC CATCGACTTC ATTAACTCTA 
CTTTCTTATA AGTACTAGTA GATTTTATAA TAAAAAATCG TAATGTGGAG 
CCCTGAATTA TTTANAGAGA GCAGTATGAT GTGGTCATGA ATACTAACTG 
ATAGAAATCG CATACCTGTT AGCATTACTG CAAAAATATC TAGAAAAATA 
GCATATTTCT AAACATTACA ACAAATCAAC AATGACGTTN TTT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 16137623 [Map]; Strand: w
  - AT4G33565.1 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G33580.1 - [+] show detail - beta carbonic anhydrase 5
    Distance: -736; Region: promoter
  - AT4G33580.2 - [+] show detail - beta carbonic anhydrase 5
    Distance: -737; Region: promoter
Flanking Genome Sequence: 13-6043-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
TCATTGTGTT GGCCTCAACG ATAGGAGCAC GACAAAGCGG ACAATTGGTG 
TGTGATCTAA GCCAAGTATC AATACAATAA AGATGAAAAG CATGTTTACA 
CTTTGGTAAC AATCTAAGCA GTCTCTTCTT CTTCGAATT
```

AT4G33565.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33580.1

Model type: Protein coding
Short Description: beta carbonic anhydrase 5
Computational Description: beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33580.2

Model type: Protein coding
Short Description: beta carbonic anhydrase 5
Computational Description: beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33625.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33625.2

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33630.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF3506)
Computational Description: EXECUTER1 (EX1); FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT1G27510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33630.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF3506)
Computational Description: EXECUTER1 (EX1); FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT1G27510.1); Has 324 Blast hits to 312 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 98; Fungi - 41; Plants - 94; Viruses - 5; Other Eukaryotes - 78 (source: NCBI BLink).
Link: InterPro Scan - TAIR