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Mutant Lines
13-6050-1

13-6050-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662931 [Map]; Strand: w
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -314; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 13-6050-1 - 5-prime edge
```
AGAATGAGTT GGTCTCTCTG CAGCACCCAT GGGGTCTCCT CTTCCATAGC 
TCTCACTTAT GGCTTTCGCC ATAGAAGAAG ATCCACCTTC CGTATTTTCG 
CCACCTCTGA CGGATTAGAA CCCAAGGACG ACCCGCCGGA ATCTCCTCTC 
CCTTCCTCAT CCTCTGCTCT CGGTAAAGAC TTGAAAAAGG TCCGCCTTTT 
TTCTATATCA TTTACGATTT TTCTGTTGAA ACCATAGGAA GACATGAAAA 
TGAAAATGCA CCATGTTAGA TTGGTCTCTA GTGCTTGAAC CTGTTGAAAG 
AGTTGCTCAA GCT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662861 [Map]; Strand: w
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -244; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (5UTR)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (5UTR)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 13-6050-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTCTCTCCTC CAATAATCGC GATAAGGAAG AAGAAACTTG TTGGCTTTAT 
TGAACCGGTC CAATTCTCAA CCGAACTCCG GTATTCCAAA TTAAAAGCCA 
GCAATCAATA ATTGAATCTC GAGCCCACGA CGGTTTGATT GGTTTAGCCA 
TTTCTCGGCG CTAAATATAA TTTATTAAAA TGATGATTAT TGCGAGAAGA 
AAAGATCTTT CTTTGATTTT TGCTTGTGGA TTTGGATTTC CAGTTTCCAA 
TTCTCTCAAA TTTGCAATCC ACCTTCAAAT TCACACACAT CTTCAACAGC 
TACCTTTTCG GGAACTTGCT AGAATT
```

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR