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13-6065-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6451044 [Map]; Strand: c
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-6065-1 - 5-prime edge 
    GNGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA CTAGAATTTA TCTAGACTTC AACAAATCCC 
    TTGTTCCAAA TACATATCTA ATGAAAAAGA GTAGAAGAAG ACACAATTTC 
    ATATGAGCAC AAACTAAAAT GCACTTTTAT GAATGACATG TTTATATTAT 
    ACCAGCTCTT TTGGGGAGGG AACGCCAATC ACAAACGCCA TGCTCGTTGA 
    TGTAAGCGCC GAGCTTCTGG TCTTCCTCTG CCGTCCACTC TCCTTTCTTC 
    ATCCCGTCGA CGTCGAACCA TGTCGTCCTC CCCATTTTCT CCAGCCAACC 
    AAACTAAAAA ACCAATCTAA TATTGCCACG TTTCACCACC TCACGAGAAG 
    ACAAATTTTA AACAAGTTCA ATTATTTATT TGAAAGTGTG TCTCTCTCTC 
    CAGAAAAAAA GTGAGTCTCT CTCTACACGT TTTACTCTGT AGGATGCTCT 
    CGAGAGAATG AGTAGTGGGA TGTGTTATTC TAATTAGGGT TATACAATTA 
    TATAGCCCCC CCCTGTTNNG GTATTATTAT ATTTCCGCCG TTGGATTTTA 
    CTTNGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6451069 [Map]; Strand: c
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-6065-1 - 3-prime edge 
    CTNAAAACGG TANAGGTATT TTACCGACCG TTACCGACCG TTTTCATATG 
    CGTGTATATA TGTAGCAAAA CACTTGGGAT ATTTATATTT ATATTCCATA 
    AACATATAGA GAAGTGTATG CATCTATATG TTGTGTTTTT GCAAAACTGT 
    GTTAAAACAT ATTTTCTTCT TCTCACTTTT TTTTTNGTTT NCTNAANAAA 
    CTAATTNGGG ANCANCNAGT TNNCANAAAG TNTAAATNCN AATNGCTGCC 
    TATTAATATA TTNCANGTAG GTNTGTACCA NCNTAGTNGG ATTAAAANCA 
    TCTAAAAANC NTGNGTTAAG TNTNTAAAAT ATTNAACATN GTTTTNGGTN 
    CGNATNTATA TCTTNAAAAN GTTTTAAAAN GATTAANACA ATNTNGAANA 
    TNCTTTNTTN GNNCTTTTTN CCCCTNTTNG TNGCTGAAAG TNCTCATTNG 
    TTTTNTTANA GGACTNTGAG TTAAATCATA NGGGGGTNTN TTAATNTNCC 
    CCCCGAAATT TTCGGGATNG GAAATTNGTT ACNTNTGTAN ANATTNNNTT 
    CTNCNTNCNG AAGGGAATAN TNTAANCCAN GTTCTTTNAN TTACNANCCC 
    GGGCCGTGNA CCACCCGTGC CCTGNANNNA A

AT1G18710.1

Model type
Protein coding
Short Description
myb domain protein 47
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 47 (MYB47); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1); Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0; Bacteria - 0; Metazoa - 776; Fungi - 509; Plants - 5635; Viruses - 3; Other Eukaryotes - 1752 (source: NCBI BLink).
Link
InterPro Scan - TAIR