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13-6076-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)
seedling (PO:0008037)
  • abnormal (PATO:0000460)
    (Seedling::abnormal shape)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 862700 [Map]; Strand: w
      • AT5G03450.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -403; Region: promoter
      • AT5G03452.1 - [+] show detail - pre-tRNA
        Distance: -231; Region: promoter
      • AT5G03455.1 - [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-6076-1 - 3-prime edge 
    TTTAAACGGN AGAGGTATTT TACNGACCGT TACCGACCGT TTTCATNCNT 
    NACGACGNTG AGNACGGACN NGCTGAGTAG AAGTNATGTA TGACATGCNT 
    CTCTCNNTNG NNGTTNNATT NTTNTTATGA GACAAAGGAA NATATGCCTG 
    CTNNCCANNT NTNTCCANNN NCCTTTNCCT TCCCTAAANG NCCCNAANCC 
    TCCTCNTNNA ANACTGNCAC CAATTNGACC TGACGCTTAC GNGTAGAGAT 
    TATTAAAGTT AAATATTAAA TGATAATAAC AAGCGGGGAT AGCTCAGTNG 
    GGAGAGCGTC ANACTGAAGA TCTGAAGGTC GNGTGTTCGA TCCACGCTCA 
    CCGCATTGTT ATAATATTTT ATCTTTTAAC TATNGNTTTT TTACTTTNAA 
    ATATTATGTT TANNAACTTC CGGGAGTNTC TNTNATTNGT AACCTATGCN 
    ACTCTGCCGA GACNTNTTGG CCTTCTNCTC TGCCNAANTC TGNTNCAGTA 
    NCNGANACGA ACCTAATGCC GNCTCGCCGG AGTNNCCCTT TCAGTGGTCA 
    CGGGNGTNCA ATTGNACGAT TNATTGAATT NGGGGNNGNA TNTTGNACAC 
    TATGGAGAAA AAGAAGACCA NNAANAGGAN NACNANGANN AGGAAGACGN 
    AGGNGGAAGC ATTTTGTNCN CTNTGGGNGA ACTNCAATNA GGAAAGACCA 
    ACGANGGAAN AAGGAGCGAA GNAANATTNC GAACNCCCAN ACNNAGGGAA 
    TNAAATGNNT GTACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 862769 [Map]; Strand: w
      • AT5G03450.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -472; Region: promoter
      • AT5G03452.1 - [+] show detail - pre-tRNA
        Distance: -300; Region: promoter
      • AT5G03455.1 - [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-6076-1 - 5-prime edge 
    CCAACATCGC CATCATCGAT GTCAGGTATA ACATAATCGA TTTATTTCCG 
    TCGATTTTAG TCACTAATCT GATCCTTTAC CAAATTTTAG TTCGAATCAA 
    TCCCGATTAT TGTTCTTAGG TTTGATTTTG CTCTACTATG TAATACTGAT 
    ATGCGTTTTA AGAGATTACT TTACTTTTGA ACTCTGGGGA TCAATTAATT 
    ATGAACATGT TTTCTAAAAC TGGATATTTT GTAGAATCTC TGTCGAAAAA 
    CAACTATTAG GGACCTCATG AGCTTGGAAC AAAGGTTTTG TGGTTAGATG 
    GGCTGAGAAA GAAACAGACT TTTTGTAATA CTTATATAGG TTCTTCTGAT 
    ACATAGTTAT GGCTTAAACA AATTTAGACT TTTTATGAAC CTATTGTATA 
    GCTCACATTG GAGGAATTGT ATGTTTTTAA GGGATGAAGA GAGGAATTAT 
    GACGGGCATA TAGCTGGATC GCTACACTAT GCGAGTGGCT CGTTTGATGA 
    CAAGATCTCA CATCTTGTTC AAAATGTCAA GGACAAAGAC ACACTTGTCT 
    TCCATTGTGC CTTGAGCCAG GTGTGTGTTT TACACTCTTT TCACTTCCCC 
    ATAAGATCTT CTTTTCCTCT TTTTTGAGAA ACAACACATA GGTTAGATAA 
    GCGGCATCAA TTGGCTATTC GTAA

AT5G03450.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03750.1); Has 6680 Blast hits to 3674 proteins in 290 species: Archae - 4; Bacteria - 114; Metazoa - 3367; Fungi - 525; Plants - 736; Viruses - 186; Other Eukaryotes - 1748 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03452.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR

AT5G03455.1

Model type
Protein coding
Short Description
Rhodanese/Cell cycle control phosphatase superfamily protein
Curator Summary
Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.
Computational Description
CDC25; FUNCTIONS IN: protein tyrosine phosphatase activity, arsenate reductase activity; INVOLVED IN: protein amino acid phosphorylation, response to arsenic; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR