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13-6079-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11733742 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -12178; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -5535; Region: intergenic
    2. Chromosome: 1; Position: 15082608 [Map]; Strand: w
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-6079-1 - 5-prime edge 
    AAACACGAGT CGAATATGAC TTGATCTCAT GTGTATGATT GAGTATAAGA 
    ACTTAAACCG CAACCGGATC TTAAAGGCGT AAGTATTGTA TCCTTGTTAA 
    AAGACACAAA GCCAAAGACT CATATGGACT TTGGCTACAG CATGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11736113 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -14549; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -3164; Region: intergenic
    2. Chromosome: 3; Position: 13592032 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8058; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9768; Region: intergenic
    Flanking Genome Sequence: 13-6079-1 - 3-prime edge 
    CTAAACACTA ACCAACCTTC TTCTTGCTTC TCAAACCTTC CATGGTGTAG 
    CCAAAGTCCA TATGAGTCTT TGGCTTTGTG CCTTTTAACA AGGATACAAT 
    TCTTACGCCT TTAAGATCCG GTTGCAGGTT TAAGTTCTTA TACTCAATCA 
    TACACATAAC ATCAAGTCCT ATTCAACTCC AAAACACTAA GCAACCTTCT 
    TCTTGCTTCT TAAAGCT

AT1G40104.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 88 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 17; Metazoa - 9; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR