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13-6094-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9054176 [Map]; Strand: w
      • AT1G26170.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G26180.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2...
        Distance: -568; Region: promoter
    Flanking Genome Sequence: 13-6094-1 - 5-prime edge 
    TCAATAAACA AGCTCCAGGG GATAACAAAT CAATGACATG AAAAGGATAT 
    TTGACGCAAT CCCAAAGAGA GGTCTTTGTT AGCAGCAACT CTGCACAATG 
    CACCTCCCAA ACCCTACAAG AAACAAACAT CTTTTGGGTA AAATCTAACT 
    ACAAAAAAGA ATCTATAGAA GAGAAGCAAC TAGCTCGAAA GTAACCCAGA 
    CGATTTAAGC AACGGACCTG GTTGAAGAGA AGCCTGATTG AGAGAGGTCT 
    CAGCGAAAGA ACGAACGTTC TGGTTAGGGT CAAGACTTGC TGATAAGCAA 
    CCGAGCAGCC ATTGCTGATC TTGGTCCACC ACCATTGAGA GATTAATCGA 
    TGGAATCCAA TTTCAGATGG GATCAAGAAA TTGAGTGTTT GAAAATTGTT 
    TTAGCTTCCC TCAATTTTCA AATTCCCGCT TGTCCCTTTG GTATAGGAGG 
    ATGTCGGAGA GACAGTAGAA ACCAAATGGA GTTTAAGTAG TTCACCTCTC 
    CTAGATTTTG TTGTCGAGAA AACCCTTTAT AGACAGAGGT TGCAGAAGAA 
    AGAAGCAATC AAATAACCAA AATAAACAAT TACCAAACCG GATTTTAACC 
    GTAGGTTTAA ATTGGTATAA ATCCGGCCTT AGTGTAATTT TCATCAGTCG 
    AACAGTTTAT CTNCAGAATC AAAGATAAAC NGGAGGAGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8955445 [Map]; Strand: c
      • AT1G25500.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT1G25500.2 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon7 (CDS)
      • AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 13-6094-1 - 3-prime edge 
    TCTACANGTA TATCTCCNAT TTTNCNANAG GAGGCATNGG CTAATCAAGC 
    GGCCGTCAAA ACTTCACGGG CTCGCNGAGC TACAGATGTT GGAGACNACG 
    GTGAAGCNCC TCAGACATCT CAGTGTAGAA ATCAGNATCC CATCTCTGAA 
    TCAACAAAGG ATCTTCAGCA AAACATATGT ATACCGATGT CACAGCGCTT 
    TCGACTACCA CCATTCCTAA ACCCACCTGA ACACCACATT GGATCAATGA 
    AACAAAGTGA ACAAGTTGGT CATGTANTTT TTTGGGTGAC TAAAAGAGTG 
    CACAAANGAA ANCTCNCAAG AACCATTCCC ATCAACATAG CCGTAGATGC 
    AACCATTATA ACTCNGTCAC TGTACTTGAT CCANGCCCAT ATACCAATGC 
    AAGAGCCTGT GATGAGTCCT CCAAAGATGG TTCCCATCAN AAGTACAGCA 
    CCAGAGCANT CATATGCAAC AAGTGCCTCT ACACCTGTCG ACTGAAACAA 
    TNCCCATGCN TCTCTTGCTG ATTTGTTGAA TCCTTTTCCA TACACTGCAA 
    TCTGATNATT AACCAAACGT NCGTTTTCAT TCTGAGTCTC ATTGCTCATA 
    GGAGGGGAGA TGANGAGCTT TGTTTAAAAA CCTGTCTATA TTTATATATA 
    TACCGGGACT GNATGCAAAC TTTGTTAAAA AAAACNAGCC TTGTGTTTNA 
    NCTNGATGAA ACAGG

AT1G25500.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25500.2

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25500.3

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26170.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26180.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR