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Mutant Lines
13-6105-1

13-6105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 509022 [Map]; Strand: c
- AT3G02470.4 - [+] show detail - S-adenosylmethionine decarboxylase
  Distance: 0; Region: intron1 (5UTR)
- AT3G02468.1 - [+] show detail - conserved peptide upstream open reading frame 9
  Distance: -65; Region: promoter
- AT3G02470.3 - [+] show detail - S-adenosylmethionine decarboxylase
  Distance: -74; Region: promoter
- AT3G02470.1 - [+] show detail - S-adenosylmethionine decarboxylase
  Distance: -95; Region: promoter

CGTTCGTGAG GAGGAAAAGA AAGGTAGAAA GAGTGCCTTT ATATAAGTAC 
TAGGGTTATG CTCCCTGACA ATTACGTATT TGACCTTATA CCTTAGCGTT 
TATATCGCGT GAAGCTATCT GAGCCGTTGA TTATTTCCAA TTTGCCGTTC 
CGAGGTTTTT ACCCAAATTA CCCTTCAACC ATTTACTTAC GTTGGAATCG 
GTAGGTGCGA GCATCTCCAT TCCTGACCGC AGATAAATAG CCCCAACTAT 
TTTAACAAAT TTGCTTTTTC CTTTCGCCGC AAGTAGAAAT TATTTTAATT 
TTAGAGATTT GTTTCTTTAT TATTTTTTGA CATTATCTTT TGCGGAACAA 
CAAAATATAA AACAGAGATG GGCCAACACG CTATATTAAC CAATCAAAGA 
TTGACACGTG TTTAGAAGAT ACGTGTGCCG TTGAAGCGGA TAACTCGAGG 
CGAGCTGTCA CGGTAGCGTA GCCGTGGGGC CTAAAAGAAT CAAATTCTAT 
TTCTCAAAGG CTCTCAACTG CTCCACTACA TGACAAAATT GGGCCTCCCC 
GTGACTCACT CATGACTCAT GTCCACCATT TGTCAAAAAT CAACAAATAA 
AATGTATCAA AATTATAACC AATCACTATT GACCAGTGTG TAATTATTTA 
TTCCAAATCT TTTTTGTTCA ACCATAAGTC GNATTTAAAA T

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 509138 [Map]; Strand: c
  - AT3G02470.4 - [+] show detail - S-adenosylmethionine decarboxylase
    Distance: 0; Region: intron1 (5UTR)
  - AT3G02468.1 - [+] show detail - conserved peptide upstream open reading frame 9
    Distance: 0; Region: exon1 (5UTR)
  - AT3G02470.3 - [+] show detail - S-adenosylmethionine decarboxylase
    Distance: 0; Region: exon1 (5UTR)
  - AT3G02470.1 - [+] show detail - S-adenosylmethionine decarboxylase
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 13-6105-1 - 3-prime edge
```
CACGAACGCA TCTCATTGCT TCATCATTAC CAAATCATCA ACTTAATCGT 
TTCTCTCAAA TTTAGGGTTT TCTCTTTTCT CGAAAGTCTT GCGGTTTTCT 
GAATCATCTC TATCTGGTGA GTCTCTTTTT TGAATTGTAG ATCTGCGTTT 
TCTCTCTGTA GATCTGTTCC GTCGTTGAGG ATAATGTTTT TTAATCGGTG 
AATT
```

AT3G02468.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 9
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1
Computational Description: conserved peptide upstream open reading frame 9 (CPuORF9); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 10 (TAIR:AT5G15948.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02470.1

Model type: Protein coding
Short Description: S-adenosylmethionine decarboxylase
Curator Summary: Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description: S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02470.3

Model type: Protein coding
Short Description: S-adenosylmethionine decarboxylase
Curator Summary: Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description: S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02470.4

Model type: Protein coding
Short Description: S-adenosylmethionine decarboxylase
Curator Summary: Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description: S-adenosylmethionine decarboxylase; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link: InterPro Scan - TAIR