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13-6108-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1262931 [Map]; Strand: w
      • AT2G03980.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 379; Region: intergenic
      • AT2G03990.1 - [+] show detail - transposable element gene
        Distance: -2187; Region: intergenic
    Flanking Genome Sequence: 13-6108-1 - 5-prime edge
    GATTATAGGT CTTTAATCGA CTTTAAAATA AAGATAAGTG AGCTTGCAAA 
    AGTGACCAAA AAATGACAAC TAAAGATACG TGAAAGATTT GTCTAAACAG
    ATTATTGCTC TATGATCATG TAAATTACCA AAAAAAGAAA GTAAAGAGGT
    GTTATTCGTT TATGATTTTA AAAGAGTTTT AGTGATTTAA ATTGTCATGT
    AAAATCTGTT GTTATTCAAT CAAGATTTTT TAAAAGTATG TTAAAGTTTT
    GTGTTATTCA TTTAAGATTT GTAAAAAATA ATCTAAAATC TTCATAAATT
    TTGGGTTATT AGATACATAC TCTTATAAAG TCATTAAAAG TTTTGTGTTA
    TTCAATTAAA ACAAAAGAAT CTTTGATTGT TAATGATTGT TAATAATTTA
    AATTATTGTG TTATTGATTC ATGACTTCTT ACATTTTGTT TTTACAAAAT
    AATGTCATGG AAAGTCATGA AAAATATTAT CAAAATAAAG AGATTGTTTG
    AGAAACTTTA CAAGATTATG AAAAACTAAT CAACAAGATT ATAAGAAATT
    CTCTAACAAT CGTTTAAAAT CTTTCATTTC TTTACTTTCA AGAATTTAAT
    TGAAGTGATC AAAATTCCTT ATAAATTAAG AACCAATAAG ATACGTCTGG
    ACATTAGCCA TTACTATTTT GGTTTAAAAT TAGCCTAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1262658 [Map]; Strand: c
      • AT2G03980.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 106; Region: intergenic
      • AT2G03990.1 - [+] show detail - transposable element gene
        Distance: -2460; Region: intergenic
    Flanking Genome Sequence: 13-6108-1 - 3-prime edge
    CCGTTNNACG GACNAGGNAT CTCNNTTGAC CGTTACCAAC CGTTGCNANN 
    CCTNTGTGTT GCTNTCAGTA CTTCATTANG TCCCTTGTCT CTCANAANAN
    AAATTCGTNC TTATAANTCC CAAGCTCATC TTAAATGGAA ATAATGATAA
    AAACTTTAAA TGGACCAATT CCAACCTTGG AGTCTATCGC CTCTCGGTTT
    CACCGTNTTT AATAAACAAA ATTATAATGT NGNTGATNCG TTNACATACG
    GGACGGAAAC AAAAACGGGA TATACCGGTN NCGAAAACNA ACGGGATAAA
    TACGGNNATC GAAAACCGAN ACNATCCNGA GGAANANTGG NGANGTTCGN
    GNGGCGCGCG GTNTNTGNTG GNGTTCNNCG NGATNNNTNT TTNTNAGTCT
    TTNTCCTGTG NCGNCTTGCG TNTNTGCNTG NCCNGGNGNG NGTGTTTNCG
    NNCNCCNNNN GNGTNTCCTN TNGGTNCNGC NCGCNCCTGT CCGTNNNCNC
    NNNGCTTTNC NNNGNGCGCN TNTGNGCNCN TNCTCGNGTG TNTCCGCNNG
    NNTCATNNTN NCNCGNNNTN TGTNTCGNTN NAANGGGGGN CGNGNNCCGC
    GTGTNCNTNN NGGNNNGGNC GNGNNCTCTA AGAGTCGTNA GGCNTCCCGN
    CNNCGTGTNC GCNTNGNCNT GNNCNGCGTG TCNNNCNNTG ANNGACNTNN
    NCTGATCNTN NNNNNAT

AT2G03980.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04020.1); Has 3198 Blast hits to 3166 proteins in 143 species: Archae - 0; Bacteria - 189; Metazoa - 0; Fungi - 13; Plants - 2979; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03990.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR