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13-6147-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1124237 [Map]; Strand: c
      • AT3G04260.1 - [+] show detail - plastid transcriptionally active 3
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 13-6147-1 - 5-prime edge 
    ATGATGAGGA GGAACAGGAA GGAGATGAGG ATGATGATGA AACTAAAGAG 
    GAAGAGGAAG TGGTTGTTGC AGAAACTGAG AATCGAGCAG AAGGAGAGGA 
    TTTAGTGAAG AATAAGGCAG CCTGACGTGA AGAAGCATCT TCAAATGATT 
    GGAGTCCAAC TCTTGAAGAA TCCGATGAAG CAAACAGAAC AAATAAACGT 
    GGGAAGAGGG CATCTCGTAT GACACTCGAG TTTAGTACGT ATAACACACT 
    ATGAATCATA GTCTATTATA TGTTTATGAT TTAGTTAGTC GCATGATCAT 
    GAATTTGATA GTTTAAGCCG GTAAAGCATT ATTACACAAT TGTTTTATGG 
    TCCATCATGT TAATAATAAT AATGCATAAT AATGAATTTG TGTAGGTGAT 
    TGAACTGGGT GGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1124365 [Map]; Strand: c
      • AT3G04260.1 - [+] show detail - plastid transcriptionally active 3
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 13-6147-1 - 3-prime edge 
    CTCATCATTG TCAGCTTCTT TTGAAACGTC TTCAATCGCT TTCTCCGACT 
    CACTGTAACC ACTGATTCAG TCGTTTCCTT GGATTCAATT GATGTTTCAA 
    TCAAGCCTTC TCCAAGAAAC CGACGTTTCC AGAACTCCGT GTCTCCTTCA 
    TGTAGCTTGA TTCGACATAT TAAATCGTCT ACTCGAGATC AACATTCAGA 
    GATCAAGTAT CATGTCTTGA ATACAGAGCA GAACAAATCT CAGATTAAAA 
    CAGACTAGTA ATCGAGTGAA CAATTTCAAG CACATAACCA CATCTTCAAT 
    CTCTAACTAC TAGCAACTAT TCCAAGAGAC ATGAAATCAT TATACCACTT 
    ACTTCAGAGT GAATTTCTTC CTGGCAAGAA GATCCCAAAT CGTTTGGAAT 
    TGTGGATTTA CAGAACTGTT CCTTGAACTC GAGGTACATA GAGCGAAAAT 
    GTGAAATTGG ACGATTGAGA GAGATGAATC CCGAAAACGG GAATGATTTT 
    TTTATTTTTT TTTGCTTTTT CCCTGACGAA TCAGCTTCCG CCACATCACC 
    CGATACTGGG TATCACAAAT ATCATTCCTC TGATACGGAT CAGGCCCAAC 
    TATATACTTT AATCTATTAA ACAATNATTT ATGGGCTTGT GATACTCTGA 
    TTATATTAGC TATGTACATG GTCTTAAGAC ATTGATCCNA

AT3G04260.1

Model type
Protein coding
Short Description
plastid transcriptionally active 3
Computational Description
plastid transcriptionally active 3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 11987 Blast hits to 8407 proteins in 477 species: Archae - 24; Bacteria - 285; Metazoa - 3588; Fungi - 1065; Plants - 3982; Viruses - 208; Other Eukaryotes - 2835 (source: NCBI BLink).
Link
InterPro Scan - TAIR