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13-6168-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 434541 [Map]; Strand: c
      • AT5G02190.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -670; Region: promoter
    Flanking Genome Sequence: 13-6168-1 - 5-prime edge 
    ACTCCAAGAG TCTAATTTTT CACCATATTT TAAAATTACT TTAGGTTCTA 
    ATCATCTTTT ATCAAGAGAG GTGTTATATC AAACGACTTC GTAATATACA 
    TTGCAGAGTT TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 434657 [Map]; Strand: c
      • AT5G02190.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -554; Region: promoter
    Flanking Genome Sequence: 13-6168-1 - 3-prime edge 
    CTTGGAGTAT ATAAATGGCT CAATCTGTAT TGCCCGCACC GCCCAAACTC 
    CCATGGCAAA TCCATTGACG AAACCAAGGT AAAAATCACA TGCTTTGAGC 
    GTTTTTTTAA AACAGAAGTG TAAGCT

AT5G02190.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Curator Summary
encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.
Computational Description
PROMOTION OF CELL SURVIVAL 1 (PCS1); CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G39710.1); Has 2066 Blast hits to 2053 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 96; Plants - 1822; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR