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15-0012-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9732776 [Map]; Strand: w
      • AT1G27930.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: -57; Region: promoter
    Flanking Genome Sequence: 15-0012-1 - 3-prime edge 
    ACCCTAATAC GTATTGAGAC GAAATCAACT GAAATTGTAT GGGCGATCTT 
    GTTTTTTTGC TTATATTTGG GATGAACGAT CTTGTTTAAT GTTACTAATT 
    GTTATCTTTA GCAACCCAAA GTGGGCACGA AACCCTATGC TCCAAGTCCA 
    ATTAAATAAC ATATGTGTCC ACAGAACTTT TTTCAAAATT CGAATAAGCC 
    ACAGTTACGT GTCTTGTTCA TATCATCCAC TATAACCCAA AGCTGCTTCA 
    CTGGTCGGAT ATGGACACGT GTCATTTAAT CAGGCCATCT CCAAGAAAAA 
    ATATCCCAAA TCTTTCTTCC CTATTCAGTC CCCCAATCAA CAATCCTCTT 
    CACATTTCTA TTTTCTCCTC CGAGGTCGTC TCTCGACCAA ACCACAAAAA 
    CCAGAACAAA AATAACTAAA AAACAATCAG ATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9732892 [Map]; Strand: w
      • AT1G27930.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: -173; Region: promoter
    Flanking Genome Sequence: 15-0012-1 - 5-prime edge 
    ATTAGGGTAA TCTATGATGA GTTTACCGGT GGATAACAGT TTGAGATTTT 
    GTCTTCTTGT TTTAAAATGG ACTTGTGGAT TTGTTATCTG TTATTGTTCA 
    AGGTTTCAAG CTATAAATGT TGTTTATCAT AATTCATAAG ATCCAAAAGT 
    TTGTATTTCT GAAACCAGTT TTTTAATTAA ATTTCTGATT TATTCATGCA 
    TTTTTCATTT TAAACTGTAA GAATTTCTAT ATTGAATTGA TATGAAAATG 
    AAAACAAAAA TATAGATATG TCCGGAAAGA ATTTTTTGGT TC

AT1G27930.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Curator Summary
Function unknown. Interacts with eIF3.
Computational Description
FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR