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15-0019-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8631864 [Map]; Strand: c
      • AT1G24320.1 - [+] show detail - Six-hairpin glycosidases superfamily protein
        Distance: -893; Region: promoter
      • AT1G24330.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-0019-1 - 3-prime edge 
    GCTGCTAGCG ATGCCAAGGT TATATTCTCA TAAATGGATA TGTTTTAACC 
    ATCTCTATCT CTAAGATTCT TGTCGGTAGT TGTTGGAATC TAATGAACAA 
    GGGATATGCT TAGTATGTTA TTGTTATCTC CTTTTTTGTG TTTTGGTTTT 
    GGATTGCTTC TATTTTTTGA TGTTATAGAG TTTTGATTCT CCTGAATT

AT1G24320.1

Model type
Protein coding
Short Description
Six-hairpin glycosidases superfamily protein
Computational Description
Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24330.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR