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15-0033-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923952 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0033-1 - 5-prime edge
    CGTTTGAGAG AGTTTTGGGG GTTCCTTTTG ATCATCAGGC TCCGCTTTTC 
    AAGACTTGTG GGGATGCGAC AAAAGATTGC TCTGACATGT TTTGACTTTG
    ACAGTCCGTT TCAGACCAAT TATAATAAAA AAAACAAAAA AGGGAACAAC
    TATACNGTTT TCCAGGCCCA TCTCATTCGG AGGCCCACTT TCAATACGAC
    ACAGAATCAA GACAAGAGAC GCAAGACGAA CTTCTTGAGC CCTTTTGTTA
    ATTCAATGGG CCCTCACTAA GAAGCCCATA ATAAAATAAA ATAAGTTCTA
    TTTTCAAACA TTGTACTATT ACTTTTTGTA CCGGCCGTGT TTATTCAATT
    CTCGTATTTG TAAGAATTTA TAAACAAAAA GCAATGATTA AAACATTTAC
    AATGACATTA TGACAATGAA TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923830 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0033-1 - 3-prime edge
    TGCATCACTT TTGTCTGCCA CCTGTGACTG ACTGTGAGGA TC

AT4G38210.1

Model type
Protein coding
Short Description
expansin A20
Curator Summary
expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38210
Link
InterPro Scan - TAIR