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15-0073-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 164005 [Map]; Strand: w
      • AT2G01340.1 - [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal pro...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0073-1 - 5-prime edge 
    GTAGCAACCT CACCGCCTTC AATCATCAAA CATCCAAACT CTATCCTTTC 
    GTTTTCTTGT TAGAGAAAAA TTAATACTAG ATGGGTAACA GTTTAGGCGG 
    CAAGAAAACG ACCAAAGTCA TGAAGATAGA CGGCGAGACT TTTAAACTGA 
    AAACTCCGGT GACGGCTGAG GAGGTCTTAA AAGACTTTCC CGGCCACGTC 
    TTGTTAGACT TCGAATCCGT CAAGCACTAC GGTGCCCGAG CCAAACCACT 
    TGAGGTATGT TTTTTTTTTT TTTTNTNAAA ANNNNTNNTN NNNTTTTTNG 
    NAAANNNNNN NAAANNNNNT TTNNANAAAA AAANCNTTAA NNNTTNTTGG 
    GGGGCCNGGC AAACNAANGG NNGGGGGNAA ACNGGTTTTT TTTTGGGGGG 
    GACCCGGGAA AAAANNNNCC CCCGAAANGG GNAAAANANG NANTTNCNAC 
    CCGGGGCCGN NANCNNCCNT GCCCCTTTAA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 163889 [Map]; Strand: w
      • AT2G01340.1 - [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal pro...
        Distance: -65; Region: promoter
    Flanking Genome Sequence: 15-0073-1 - 3-prime edge 
    GTTGCTACGT TGGGGTTTTA AATGATGGGG TTCGCAGACA TGTGCATATG 
    GGGGTAAGAG AGATTTGTAG ATACGTGGAA ATGATGGTCC ATTTTTATTA 
    ATTTCTTAAT TAATGGACAA ACCTTTTGAC TACGTACGAT TTCAAGCCTA 
    ATTATTTTAA TCATGATGGC TTTTTTAATT AGTATTTGGA TTTCTCTTAA 
    ATTGTACTAC CACTATTTCA ACAAGATGGT ACTCGTGTGC ATCACATGCA 
    ACTATTAAGT ATAGCTTGTA GATTCATGTT TATTTCAAGA GTATATCACC 
    TTGTTATTCA ATTACCTTCT TTTATGTCAC GTTAAAATTT TAGAATTAGG 
    GTTTGGATGG TTATGACGGT TGAGGCGGAC AAAACCGTCA ACGGATCAAA 
    CCGTTTTTTA TTTACCATTC ATCAATTATA GTATGCACTA CTTCGTAGAA 
    AAAAAAAAAA CCNGCTTTNG NAANGGGTTT TTNNNNACNA AAAAAATTNN 
    ANCNNCNCNA NTTANTNGNC CCCCTTAAAA ANNANGNNAT TTAACCCNTN 
    CCCAATTTAA CCCNTTTGGN NGGCGGNCNN CCTTTNAAAG TTNCAANCCN 
    GGGCCGNAAN NCCCCCGGNC NTTTTNA

AT2G01340.1

Model type
Protein coding
Curator Summary
Encodes a protein whose expression is responsive to nematode infection.
Computational Description
At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR