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15-0087-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958557 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -258; Region: promoter
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -344; Region: promoter
    Flanking Genome Sequence: 15-0087-1 - 5-prime edge 
    TCTGTAAGTA TATATATATA TAAAACTAAA AGGAAAATCA CGAATTATAG 
    TATCAAAAAT AGATTTAATA ATAAAAATAA GGATTGGTGA CGTGGNGCAC 
    AAANGGTGGT AACAAACAAA CACAATCTTG ACTAAATTCT ATAGAAATAT 
    CCCAAAGAAA AAAAAANCAA NNCCAAAAAA ATNTNGTNTA TTGATTTTNA 
    NNATGNCNAT GTTGANGNCT NAAANATNNC TCTTTTATNT ATNGCTCCCG 
    NGGGAGTTNA NTTTNGGGGC NNCAGNCTNT NGTNTNACTA NCNGGGGATT 
    GGGGAGTTTN TCCGGCCGGN AANCATNCNT TCNTNGGGGN NGTTGGCANC 
    GTTNNCAACA TNGTNATCAT CTATCTTTTA NATNNCCANA NAAAGCTCTN 
    TNTCTNTNTG GGGCTCNCCC TTTTNGGNGA ATTTTTANAN AAGTANCCTN 
    TNAACNGGGT TTNNAAAAGT TTTNANGGCG NNAAANANTT NGGANAAAAN 
    NCCNNNNGAA ACNAAAACCT TNAAGANCNC NCCGTTNGGN CTNTCGAAGT 
    NCNTNNCAAC NNCNNGGGAT TGGGNNCGGC TTTTTCTTGA NCCACAAAAN 
    GGATNNCTNC CNCCCTGGGA ANCCCNTTTN NGGTTTGGTN TAACCCCANC 
    ANAANANAAC CCCNTTNTTG TTTTNNAANA NGGGCGCCCN AAANANTNGN 
    AGNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958441 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -142; Region: promoter
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 15-0087-1 - 3-prime edge 
    CTTACAGAGA TGCGAGCTTC ATATTATTAT TTTTATCTTT TTGAACACCA 
    AAAAAATAGC CTCGTATTAT TTTTAAATGA TCAATTATGT GATCATATTT 
    AAAAATACGA TCCGGTTTTT AAGGGATTTG AACGGATCAA ATGTGTTTCC 
    GGTTCGGTTA TATAAACCGG TATTTTACCA TATCCAACCG AAATGAGTAT 
    CGACGGGAAT TATCCGTAAA CAGAGTGACA GTGAGGTGTG AAGGAAGAAG 
    ACGATGGCGT CAATGTCTCT CTCCTTTTCT TCTTCGCTAT GTTCATCCAG 
    AATCCCCGAA GGTAAGCGTA GGTTTCGTCA CAGAGATGTG GGCATCGTTA 
    GATGCGTTTT GGCTGCTTCG AAATCTTCTC CGGGAAGTGT TACGAAGAAG 
    AGGCTTTGGA AAGACGGCGA ATT

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR