1. Home
  2. Mutant Lines
  3. 15-0108-1

15-0108-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30277235 [Map]; Strand: w
      • AT1G80520.1 - [+] show detail - Sterile alpha motif (SAM) domain-containing protein
        Distance: 176; Region: intergenic
      • AT1G80530.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 717; Region: intergenic
    Flanking Genome Sequence: 15-0108-1 - 5-prime edge 
    GGATGTCTAG GTCTTGTAAC ATTTTCGTGG TACAAACGAC GCCCTAACCA 
    TAAAGAAGAC GCTCGAAACC CTAGATATAT AAGCCTTTCT AGATAACTTC 
    AAACTTGGAT CATCATCATC ATTAGAGAGG TTTGATTTCT CTCACAAGGA 
    AAGCAATTAG AAGAAGCGAG AGAGAGAGAG TAACTATTTA TAAGCAAAAA 
    AGAGGTTCAA AAGAAAAAAG GAAATTGCTA AATCACAATT AACGGTCACA 
    TTAAGATTTC CTTTTTTCTT TCACAACTAA ACGGTCACAT AAAGATTTCC 
    TTTTTTTGTC TGTAATGAGT TTAATTAAGG TGAAGACTCA ACTCATTGCC 
    TGAGTCAATG ATGTTGATGA TCCGATCCTC AAAACTCACA AGTATACTAA 
    CCACAACACT GTATACTTTC ATGTTAGTAT CATGATTCAT GAGAGTTTTA 
    AAATGGACTA CTTCAAAGTC CAATGTACGT TGGGACTGGC GGCCGAGAGA 
    AACAGAGAGC ATTATTGCTG GTTTGGAACA AAAAAGGTCG AGACTATCTC 
    TAANAAAACC AAAAGCTAGC TATGATGAAG AAAGATGACA TCTCTTCTCT 
    CAAAGAGATT TGGTTGCTCA AATAGTCTCG TTTTCCGGTA GCTGATAGTC 
    TAGTACAGCT TGNGGTCCGG

AT1G80520.1

Model type
Protein coding
Short Description
Sterile alpha motif (SAM) domain-containing protein
Computational Description
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80530.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 2493 Blast hits to 2437 proteins in 753 species: Archae - 26; Bacteria - 1395; Metazoa - 19; Fungi - 170; Plants - 599; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).
Link
InterPro Scan - TAIR