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15-0127-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16673640 [Map]; Strand: w
      • AT3G45450.1 - [+] show detail - Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases super...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-0127-1 - 3-prime edge 
    ACTAAGACAT AACATTAACA AGAATTGGTG CATTTACTTG TGTCCGGATA 
    TTACTAGGAT CTGCACCCAA TATCTCCAAG ACACGAACTG CAATACCCTC 
    CCCTTCACGA AGTAGACCAA GCAAAAGGTG CTCTGAACCA ATGTAGTTAT 
    GCCCTAGGAT CAACAATAGC AACAAGAGTC AAGTAACCTT ATGCCTTGTA 
    CAACACATAA CAAGCTCCGA GCCTAAATAA TAATAAATAG CGAAAGATCT 
    TTACCGAGTT GTCGAGCTTC CTCTAGTGAC AAATCCAGCA CACGCTTTGC 
    GAGGAGTAAA TGGAATCTCC ACTACAACAA ATCCACTCCC TCTCCCAATT 
    ATCTTTTCCA CTTCCACACG TGCATCTTTA AGATTGATCC CCATGGATTT 
    AAGAACCTTT GCAGCGATCC CAGTCCCTTC CCCAATTAGA CTTAGCAGTA 
    TATGCTCAGT CCCAAAAAAG TTATAGCCAA GTCTCCGAGC TTCCTCTTGA 
    GCCAACGTTA TGACCTTAAT TGCTTTCTCA GTAAAACGCT CAAACATCGA 
    TTAGGGTATG CATCGGCTAG CTTTTTATTT CCGGGATGAG ATTGAAAGGT 
    TAAACTTCAA AAGGAAAGGC CTTGCCATTA AATCCAGTGC ACTGGAAGCC 
    CTTAAGTTCC CTAACCCTGA GAACCTTTGA ATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16673756 [Map]; Strand: w
      • AT3G45450.1 - [+] show detail - Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases super...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-0127-1 - 5-prime edge 
    GTCTTAGTAA ACAATTTCTT GATTACATTT TGAGATACAT ATATCATTTT 
    CAGGTTATAC GTATGGTCGA GGGAAACAAT GAAGTCACAA CAAGCGTTGG 
    TGGAGGAAGT AATGGAAACA GCAACATGGC AAGTTGGCAA CACTAGAAGA 
    GTATGGGACT AATTAACTTA ACTAAACTAG CAGAAGAGGT AATAAATATA 
    TGTACTCATC TTGAAGAGAG TGTCATGTTA ATGCTTGAAG TTTTATGCTG 
    AATTTTGGTT TTTTACTTTC TATGGTAGGG TAAACTGGAT C

AT3G45450.1

Model type
Protein coding
Short Description
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Computational Description
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 16633 Blast hits to 16323 proteins in 2747 species: Archae - 17; Bacteria - 12492; Metazoa - 5; Fungi - 273; Plants - 382; Viruses - 4; Other Eukaryotes - 3460 (source: NCBI BLink).
Link
InterPro Scan - TAIR