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15-0148-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7408161 [Map]; Strand: w
      • AT1G21150.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: -397; Region: promoter
      • AT1G21160.1 - [+] show detail - eukaryotic translation initiation factor 2 (eIF-2) family protein
        Distance: 0; Region: exon13 (CDS)
    Flanking Genome Sequence: 15-0148-1 - 5-prime edge 
    NNTTNATNAC TACGGTNTGG AAANAGTNAC TANGNGGGGA NAGNTGACTN 
    AGGGANANCA TCNTACTGAA GATCAGCATN ACCGGGATCN GCAANCACGG 
    CGNTGNGAAT ATNACGCAGT GCGCATATAC GTANAACACA ANCATAATNG 
    TAAAAACAAC NTTTTTGACA ACCCAGGGCA AGAAAGACTG TATACAACTT 
    ACCCAGTAAT TAGTTCTGAT TACGTNCACG GATCGACTAG AAATGTGACT 
    GATAAGCCTG TCGTCTACAC CAAAGTGCCT CCCAAACATT TTCTGTTCTT 
    CTGGGTTAGA AGCAATGATC TAATACGAAA ACAAACATTA GTTTTTAAGG 
    AAAGGCAGTA AAAACTAGAA AAATGATGAC AAAAAGAGGG ATCTCATACC 
    TTAATAGCCA CCTCCTGTCC TTTCCTTGCA TAATCAACTG GCATGTTGTT 
    GTTATTCTTA ATTGATGCGA CGCGCCCAAT GTCCATAAAC ACTCTTACAT 
    TCTCAATCCT TTTAACAATG CAAATGGGAG TTCCAACCTA AATCAACAAG 
    ACGTATTGTT AGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3818844 [Map]; Strand: w
      • AT1G11350.1 - [+] show detail - S-domain-1 13
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 15-0148-1 - 3-prime edge 
    TCGATNTCGC TGTGAANAGG CTTTCGCGAA CATCGGGACA AGGAGTCGAG 
    GAGTTTGTGA ATGAAGTGGT CGNGATCTCA AAGCTGCAAC ACCGGAATCT 
    CGNTGAGATT GCTTGGTTTN TGCATTGAAG GAGAAGAGAG GATGTTGGTC 
    TATGAGTTCA TGCCAGAGAA TTGNTTANAC NCATATGCTA TTTGGTAGTG 
    AACATTATCG TTTGGTTTAA CTCTGTTACA GTCTTAGTNG GCNCATGAAC 
    AGAACCTAAT GCTAGTCTTG TTTGTGCACC TTGTTGCTGT GTAATCCAGA 
    CCCGGTGAAG CAAAGACTTC TTGACTGGAN GACGCGGTTT AACATANTCG 
    ATGGGATTTG CAGAGGTCTT ATGTNCCTTC ACAGANATTC AAGGCTGAAG 
    ATCATACACA GAGATC

AT1G11350.1

Model type
Protein coding
Short Description
S-domain-1 13
Computational Description
S-domain-1 13 (SD1-13); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 125042 Blast hits to 123367 proteins in 4403 species: Archae - 116; Bacteria - 13667; Metazoa - 45426; Fungi - 11021; Plants - 35654; Viruses - 452; Other Eukaryotes - 18706 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21150.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 922 Blast hits to 791 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21160.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 2 (eIF-2) family protein
Computational Description
eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76810.1); Has 90488 Blast hits to 74140 proteins in 3758 species: Archae - 1026; Bacteria - 37280; Metazoa - 18910; Fungi - 5896; Plants - 2823; Viruses - 221; Other Eukaryotes - 24332 (source: NCBI BLink).
Link
InterPro Scan - TAIR