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15-0171-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18896529 [Map]; Strand: c
      • AT3G50840.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G50835.1 - [+] show detail - pre-tRNA
        Distance: -342; Region: promoter
    Flanking Genome Sequence: 15-0171-1 - 5-prime edge
    NTTCANANAG GATCTNAGGA CAGATGGAGG ANACNACNTC GGACACAGCA 
    NGATNACANA ANGNANTGNT CNNAAGNANN GTGANNATGA AAGGATCNNC
    AAGCGCACAG GGCCGTCTGA CCAGCGAATN CNCGGGGNNG GGGAAATGGT
    CAATCGGGAA GAAGTTCGGA TGCAAATTTT CGGCTCAAGT TTGTGATTCA
    CAGGAGGCAA CGATGGTCGA TAGAAGATCA CGACGTTTTC TTAGTTAGTA
    CATAAATCAG AATCATCTTG TGCTTCTAAA AATTGTATTT TTACTTCTTC
    TGTATATCTT AAAGAAAAAG ATTGATACTT TAGATTGAAT GGAACTCTAA
    AACACACCCT GATGGACTTG TTATTCAGAG ACTCATAGTA TAATGATTTA
    GAGATTATGA ATGTAAATTT GTAAAATGCT TTAAAGTGGT GCAAGGTAGA
    GTATAAGACC ATCTTCATCA AANGGNTTAT NACTAAGAAA CTGTCCAATA
    TAAAAATAAA ATATATTCAN AAAGTNTGAG AAANCNGAAA AAAATTTTNA
    AGTGAAAAAT TAATGANAAA ATTAGNNAAN NCATGGGNTN TATCAANTCA
    GTGGGNATAA GNNTNNTTTT NTNANTTAAA AAGTNTANAA TAAAACTACA
    ATNTNNGAAA ANACCTTNCT TTTNTAAAAA AACCAAAAAG AAATANNNTC
    CGGNGTTTGT TGGGGGNANN NAAAANNGNA ATANTNGAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18896628 [Map]; Strand: c
      • AT3G50840.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G50835.1 - [+] show detail - pre-tRNA
        Distance: -243; Region: promoter
    Flanking Genome Sequence: 15-0171-1 - 3-prime edge
    AAACGAAGCA CCTGATTCTC CTTCACCGGT TCCTTNGNTC TACCCAAGTC 
    CACCACCGTT TTATCACCGT CTTCCTCCGT CAGTAAAGTC CCAGTGATTA
    CTTGCCGGAG CTGTAGCTGC CTCCAAAAAC AGAACTTGTA CAACGGCTCG
    TAGTGGTAAA CGCTCGTTTT GTGCCGCGTG TGTGCANGNT TCAACAGTCA
    GTTTTCTACA ATCCATCACG CTACAAATCT TCTCCTTCTC TTCCTCCAAT
    ATCCATGAAT GAGTCTATAA AAACAAAAAT CACAACTCAA TCATCAGGTG
    CTGTGGTGTA GTGGTTATCA CGTTTGCCTT ACACGCAAAA GGTNTCCAGT
    TCGACCCTGG GCAGCACCAA ACCATAGACA ATTTTATAAA TTTTTATAAT
    TAATTACCTT GAAATATATA TCGACGGGCT CTGTATAGGC CATCATCGGA
    AACCCGTGCT TGAACCGGAA GCAAAACCGG NCAGANNATA AAACTGGNTN
    CGGGNTTAAG ATTNNCCGNN CGATGNAATT TTCACCGAGA ACTNNGNGCG
    ATCAAANGTG CCAACNNACC GGNGAAATGA CNAAGGANCN ACNCNGGNNA
    CGTGTTNGGN NNAAAACGAG GGTAANANGN NTNNCNCAGN AAANAANNTA
    GNGNNTGNCG NTTAGGANGG AAANCNAAGT NANTNNGANN GANNAGAAAA
    AAGCGNNAGG NGNGNNNNGN CNNANNTAAN NNANNAGTNN NGTGTANNGA
    AA

AT3G50835.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: TAC)
Link
InterPro Scan - TAIR

AT3G50840.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR