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15-0171-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18896529 [Map]; Strand: c
      • AT3G50840.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G50835.1 - [+] show detail - pre-tRNA
        Distance: -342; Region: promoter
    Flanking Genome Sequence: 15-0171-1 - 5-prime edge 
    NTTCANANAG GATCTNAGGA CAGATGGAGG ANACNACNTC GGACACAGCA 
    NGATNACANA ANGNANTGNT CNNAAGNANN GTGANNATGA AAGGATCNNC 
    AAGCGCACAG GGCCGTCTGA CCAGCGAATN CNCGGGGNNG GGGAAATGGT 
    CAATCGGGAA GAAGTTCGGA TGCAAATTTT CGGCTCAAGT TTGTGATTCA 
    CAGGAGGCAA CGATGGTCGA TAGAAGATCA CGACGTTTTC TTAGTTAGTA 
    CATAAATCAG AATCATCTTG TGCTTCTAAA AATTGTATTT TTACTTCTTC 
    TGTATATCTT AAAGAAAAAG ATTGATACTT TAGATTGAAT GGAACTCTAA 
    AACACACCCT GATGGACTTG TTATTCAGAG ACTCATAGTA TAATGATTTA 
    GAGATTATGA ATGTAAATTT GTAAAATGCT TTAAAGTGGT GCAAGGTAGA 
    GTATAAGACC ATCTTCATCA AANGGNTTAT NACTAAGAAA CTGTCCAATA 
    TAAAAATAAA ATATATTCAN AAAGTNTGAG AAANCNGAAA AAAATTTTNA 
    AGTGAAAAAT TAATGANAAA ATTAGNNAAN NCATGGGNTN TATCAANTCA 
    GTGGGNATAA GNNTNNTTTT NTNANTTAAA AAGTNTANAA TAAAACTACA 
    ATNTNNGAAA ANACCTTNCT TTTNTAAAAA AACCAAAAAG AAATANNNTC 
    CGGNGTTTGT TGGGGGNANN NAAAANNGNA ATANTNGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18896628 [Map]; Strand: c
      • AT3G50840.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G50835.1 - [+] show detail - pre-tRNA
        Distance: -243; Region: promoter
    Flanking Genome Sequence: 15-0171-1 - 3-prime edge 
    AAACGAAGCA CCTGATTCTC CTTCACCGGT TCCTTNGNTC TACCCAAGTC 
    CACCACCGTT TTATCACCGT CTTCCTCCGT CAGTAAAGTC CCAGTGATTA 
    CTTGCCGGAG CTGTAGCTGC CTCCAAAAAC AGAACTTGTA CAACGGCTCG 
    TAGTGGTAAA CGCTCGTTTT GTGCCGCGTG TGTGCANGNT TCAACAGTCA 
    GTTTTCTACA ATCCATCACG CTACAAATCT TCTCCTTCTC TTCCTCCAAT 
    ATCCATGAAT GAGTCTATAA AAACAAAAAT CACAACTCAA TCATCAGGTG 
    CTGTGGTGTA GTGGTTATCA CGTTTGCCTT ACACGCAAAA GGTNTCCAGT 
    TCGACCCTGG GCAGCACCAA ACCATAGACA ATTTTATAAA TTTTTATAAT 
    TAATTACCTT GAAATATATA TCGACGGGCT CTGTATAGGC CATCATCGGA 
    AACCCGTGCT TGAACCGGAA GCAAAACCGG NCAGANNATA AAACTGGNTN 
    CGGGNTTAAG ATTNNCCGNN CGATGNAATT TTCACCGAGA ACTNNGNGCG 
    ATCAAANGTG CCAACNNACC GGNGAAATGA CNAAGGANCN ACNCNGGNNA 
    CGTGTTNGGN NNAAAACGAG GGTAANANGN NTNNCNCAGN AAANAANNTA 
    GNGNNTGNCG NTTAGGANGG AAANCNAAGT NANTNNGANN GANNAGAAAA 
    AAGCGNNAGG NGNGNNNNGN CNNANNTAAN NNANNAGTNN NGTGTANNGA 
    AA

AT3G50835.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: TAC)
Link
InterPro Scan - TAIR

AT3G50840.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR