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15-0175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19679758 [Map]; Strand: c
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0175-1 - 5-prime edge 
    CCCGAATCCC TTAGGCTATC TATATCTATT CGGATNGAGT CTCCCTAGTT 
    CCGGATTTCA CAAATTAAAC CCCGTGGTGT AGCTTAGTAC TAGTAGCCTC 
    AATTGAAAAA TGTCTCAAAG AAATCTGAAA AATGTTGGCT TCATTTCCTT 
    TCATAATCTA ATGTTGTTTC CCCAGTCAGT GTCTGTGACA CATAGCGAAT 
    CATGTTGCTC TAAATAATAA ATATAATATA CAATATAGAC AAACAAAAAA 
    AAAAAAAAAA NNNGNNNTTN TTGGNAAAAA ANGGGNNNNN GNNNNNGGTT 
    TAAANNTNTC AAAAAAAAAA ANNNAAAAAA CCNNANCCNA NGGNTGGGGG 
    GNGGNCNCCN ANANNNNNNT NTTGGGGGGG GNCCCCNTNG GCCNAGGGGG 
    GGGGGGANAA NNANAGAAAA ANNNGANNAT NGGANATNCA CGGGGANANN 
    NNGNAANNNN NGANGNAGNN NNAGGTNANG NGNGNAGNGA NNGNNNNANA 
    GNNGGGNGGG GTGNGNNACN GGNGGNGNGN NGNNGCGNGT GNNGNGGAGG 
    NGNGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19679874 [Map]; Strand: c
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (CDS)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0175-1 - 3-prime edge 
    GATTCGGGGC TGCAACAAAA TCACTCCCAC TCACTGGGAA GCTCGACTAT 
    GGCGGCGACG TCGCTGGTTC TGACGTGCGC ATCCCCTCTA TTCAGCAGCC 
    CTCGGGTTAT TTCTGCTACG AAGAAGCTTG ACTACAGAGT TGTCNGATTT 
    CTACAGGTCA GTTTCGCGGG GTTTAATTTG TGAAANCNNN AATTAGTTTG 
    TTTCATCTAA AATGATCCTC TGCCGATGTC TCAGCTAAAT TCCGAAGAAG 
    ATGCTCGGGA AACAATGATG AAGTGCTTCT ANAAGGAATG CCACCGGAGT 
    ATTACGATGA TGTNCGTCTC CTCATCCTTN NGNNTGTCTC TCANTCTGAT 
    TTTCNCTAAG TCNGTTGGNT NTTTGATNCC ACGAATGGCT ANGCTNGACA 
    GAGAGAGNGA TACNNANANA CCTNCNTNCG GANGCCTCCN GNGAGGGAAG 
    AANNCGATTN TNGNGANANC TNTTTNNANT AATNCCNTAG GAATNTCGNA 
    NCGNACGGTN TGNAGTGNGT GNNGCCCGGA GNGNANACNN TANGGAAANN 
    CCANAANNNG CNNGNNGNTN ANNCTNTANN GANNGATCNG NCATGGGGAA 
    NTGNANGGAN TGAAANGNGT NGGGTTNCNA GCTGGTANNA GGNTTNANGC 
    NAAANNCGNG NGNNNACNNC NCNNGTNGTN GNNNTNANCN GACCNGANTN 
    GNNANGGANN GNGGGNNCNC CGNGTTCGGA NTAGGCGTNA GAGNGTGGNC 
    CATATGNACG CCNCNTTAGA NNNCNGNTNG GANGGCCNCN CNGCAGN

AT2G48120.1

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 504 Blast hits to 478 proteins in 108 species: Archae - 0; Bacteria - 11; Metazoa - 283; Fungi - 39; Plants - 50; Viruses - 8; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48120.2

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 299 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 13; Metazoa - 176; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR