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15-0196-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7579042 [Map]; Strand: w
      • AT1G21620.1 - [+] show detail - pumilio 20
        Distance: -87; Region: promoter
    Flanking Genome Sequence: 15-0196-1 - 5-prime edge 
    TGTAAAATTG ATGAAATACA TCAAAATGAC TACATTAATC CTTTTGACAC 
    AATATGAATA ATCAATTTTA ATTAATATTA TTATTACTTG TAAAACAGTA 
    TAAATATGGC TCATTACTTC ACAGATTCTC AACACTCTCA TTCTCCACAA 
    TTTACGATGG CACACCAGCT CCGTTTTGCC GCCGCAAGAG AACCCATCTC 
    AGAAGAGTAT CCGGCGGTTG CTCTTCCTCA TCCACGTTGC ATCTCCGTCG 
    CGTTTCCTCC TCCGAGATTC ACACCATCTC CGNCGCCTTT AACTAATTAC 
    TCATTCTTGG CCGNATTAAC TCCTCAAGAA CTGGAGATGC GTTTGNAAAT 
    TGNANTGGGT GTCCGGNATG GCTAATAACG AAGATNATGN TNCGGGGTCC 
    CGGGNGANNA NAAGNGNTCG AANNTNNACC CNGAANGGNN NNGNNNGGGG 
    NGNNGGNNNN GNGNNNGNCG GGGGNNNNNN A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7578926 [Map]; Strand: w
      • AT1G21610.1 - [+] show detail - wound-responsive family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G21610.2 - [+] show detail - wound-responsive family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G21610.3 - [+] show detail - wound-responsive family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G21620.1 - [+] show detail - pumilio 20
        Distance: -203; Region: promoter
    Flanking Genome Sequence: 15-0196-1 - 3-prime edge 
    ATTTTACATT ATCGTCCGAA ATCAAATTTT CAACTANGTT ACCCAAAATT 
    CAGTACTAAA ACCTGCTCTG TTTTTTTTAC TCAAAAGTAA AGAGTTGCCC 
    GTAAAATCAT AACTTTATAC ATTAGAGTTT TGAAAAAGGA CACCGTAAAT 
    AGAGTAACTA ACTTAATAAG AGCCAAACTG GAATACNGAC AACTTTATAA 
    ACCATGCTTT GTAGCTAAAA AAACCAAGCA TCGGCATCGC CAGGACTAAT 
    GCCGNGCCAC CTCAAAATAC AAGGAAGGAA GAGGCCAGAG GTTATTGTCT 
    CCGGCGTTTC TAAGAGCTCC TTTGTCAATC GNGATGTCAA CTTGGCAAGT 
    TCAGGTCCGG GGTTGTTCGT GGGATGTTCA NATTCTGAGG AGCTGGGATT 
    ACACGTGTCT GTGGATGTTC GGGCTTCTTC AGGGCAANAA CGACTTGTTT 
    CTCANCCATT ACAGCCTCGT TCTTTCTCTT GACCACTCTT GTTTCCTCTG 
    TAGGATTGCA AAGAGCTTGA NATTCCCTTT AGCTTCTCAG GCTGCTGCNG 
    ATTNNGTCTG GCAACCATAG TTTGGACTAG GGACCNCGGA AGTGNCNGGN 
    NGGATTTGGA TNAACAANTC AATNNTTTTN NCCCNCNGGG GNGGGNNGTA 
    GACNNAAANN NNNGGNNGGG NNNNNGNNNN NGNNNNNNNT NGNGNNNANN 
    NGGGGGNNGG NGNNNNNGN

AT1G21610.1

Model type
Protein coding
Short Description
wound-responsive family protein
Computational Description
wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 560 Blast hits to 534 proteins in 143 species: Archae - 0; Bacteria - 34; Metazoa - 261; Fungi - 64; Plants - 78; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21610.2

Model type
Protein coding
Short Description
wound-responsive family protein
Computational Description
wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21610.3

Model type
Protein coding
Short Description
wound-responsive family protein
Computational Description
wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1).
Link
InterPro Scan - TAIR

AT1G21620.1

Model type
Protein coding
Short Description
pumilio 20
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 20 (PUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 431; Plants - 579; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Link
InterPro Scan - TAIR