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15-0206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178408 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -247; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -614; Region: promoter
    Flanking Genome Sequence: 15-0206-1 - 3-prime edge 
    GTTATACGAT TCTATTGGGN TTNATANGNA AGTTAAAAAC AANAATTGGA 
    ACTTTTAATA TTATCTAGGG TTGAAGGAAC TANAACGCNT GTCCNGATGA 
    TGNGGGGCTA AAAATNNNCT GCTTGCNTTT CAACCCCCCA TNTGGCGGTT 
    GGGGGNCAGN ANGCANCCCN GTGANAACTC NTTNTGCCCN NNNGNGGGGN 
    NAAAAACATG TANCTNCNTC NGAGAANTTT TTTTTGGGGC GCCGGCCCCC 
    NNGNNGTTNA GNTNTNGNGG GGGGGGGNCN CNNNAGTNNN GGANTNTNAG 
    NGNNTTTTTA AAAAAANANA NNGANAGANG AGAGANNCGC TNAGATNCGG 
    ANTNGTGNNA NCGCGGGANN GCGGGGGNGN GCGGGGGTGG CNCGAAAANN 
    GCNNGNCTGT CNCTNCNCGT GGGANCGNCT GCGCGTCCNN CACAANAAAN 
    NNTTTNNCNC CNACCNCCCC NCNCGTTGCG GGNGGGAGGG AGCGCNTNAN 
    TNNNNACAGT GGTANGNGCG GGAGGGGNGG NGGATCTCNT ANNCGTNCGT 
    NTTTCTTCTC CGAGANAGCN AACGGGAAGA GGGGNGGNGG ANGCGGNNAA 
    AGCGGGAAGG TNGCGCGAGN GGGTAANANN NNCGNCCGTT NGGNAAGNNN 
    NNNCANNGNG ANGNTTGNNG GAGANGAGNN NCGGGAGNCG CGGGGGCGNG 
    CGGCGCGGNG GGNTCNGNCN GNAAAAGAGN ANGCGNGGGN AGNGCGNGGG 
    GGGCGCACAN TCNGTGAGCN GNCGCNNTCG NNCNACGNGC AAGAGAANAG 
    AAAAAAGGAN

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR