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15-0207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426853 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -515; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -625; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -491; Region: promoter
      • AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 15-0207-1 - 5-prime edge 
    ACTCCCGTGA ATGTTATGCA ATGGACCACT CCCCACAGGT GACCTTAATA 
    TTAATTATAT CATATATAAA AAAAGCACAA GAAGAGATTG ATTATTCACC 
    AGAAAAAGAA AGGTTGGTTT GTCTATTTTT TTGTTTGTAT TCAATCACTA 
    TATATTTATC TAAGTTAAGT TGTAATTACT TTGAGGGAAC ATCATATCTA 
    TTACCTCAAG AGTCTAGTAG TTAATTGTTA CAAGATAGCG AAATTTTCAC 
    TTGTGAAGAT CATTAATAGC TATAATTGAA AGCCATCATT TGCTTGCTTT 
    GTCCATAGGA GTAAGTAACA AAGAAAAGTT AACGGCTTGG AATCTTTAGT 
    AGTTCGTGTC TGTCGTTTTG TAAATGGACC ACATAAATAG AACTTGGGGA 
    CCTATTGGGC CTGAAAGAAA GTTAAGAGAA TAGATAAGCC CACATCATTA 
    GAGCCCAACC TTTGCAAATG GGGGGATGAA TGAATACTTG GTTGGTGCGT 
    ATTGGTTCTT TCTTCTTCTT CTTCATCTTC CCTGTNGTGT ACGAAATTGG 
    GATACTACAT ATATGGATAC GCATCATCGG AAACAGTATG TACAATCTTT 
    ACTGATGGAG TTTCTCNNAN ANAANANANA AANAAANGGC CCNNNNTNTN 
    NCNCNAAANN NNGGNNNNGN NNNNANACNG CCNTNTAAAA ATNNGG

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63450.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR