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15-0223-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7653969 [Map]; Strand: w
      • AT1G21780.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
      • AT1G21780.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon5 (3UTR)
      • AT1G21790.1 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
        Distance: -215; Region: promoter
    Flanking Genome Sequence: 15-0223-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCTGGATT TTGTTGTATC ACTCTGTCTA ATGTATAGTA
    TTGAGTGGAT TTGCCTCTAG TTTGGTGTAC CGAGCCTCTC AAATGGGCCG
    AGCCTTTCAA ATGGGCTGTG ACTAGGCCTA ATGACTGTCG ACATCGAATG
    TCGGCACAAA ATATGATAAT TTTGTCGATG TTGAAATCGT ACGTTTTTTG
    TTTTAATTAG ATGAGTCAGC ATCAGGAGGA TGAAGTATCG ACCGACACGT
    GTCCGTTGCG TCCCAAANNA AAAATANCAN CCCGGGCCGN GNANCANGCG
    TGCCCTANAG NNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7653899 [Map]; Strand: w
      • AT1G21780.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
      • AT1G21780.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon5 (3UTR)
      • AT1G21790.1 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
        Distance: -285; Region: promoter
    Flanking Genome Sequence: 15-0223-1 - 3-prime edge
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA 
    AGCTGAAATG TTCAAAGTAT GTGTGTAAGT GTATATTAGA CCGGTTTCCA
    CACAGACAAA ACCTCTTGAA ACATCTCCAG CATCAGTTCT CGATCAGCTT
    GCCTGAAGAA ACTGCTGATT TCTTCTCTGA CATCATAAAT CTTTCCGAAA
    TCAAACAAAT ACATCAAACA CCCTTTCTTC AGTTTCTCCA GCTGATAAAG
    CCAAGCT

AT1G21780.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21780.2

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21790.1

Model type
Protein coding
Short Description
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Computational Description
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); Has 174 Blast hits to 174 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR