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15-0257-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555954 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0257-1 - 5-prime edge
    GTCGCAGGCG CAAACATTAT TATTACTTGG AAATTTCTGA ATCTCTCTTT 
    CAAGTAGATC GCAAGGTTTC AGATCGAAAC CCTAGGAAGA TCGAAAATCA
    CCGATTCAGA GAGAGTCCCG TGGAAGAAGA AGAAGAAGAC GAGCCGCCAC
    AAAGAGCGCA CCAGAGAGAA ACTCGCGACT GTGTGTGTGT GCCCTTTAAA
    GCTAAGCCTA AAAGTTTTTT TTTGGGCTCT TTTTTTTTNT TNNGGGNGGG
    GAAATNTCAA TANATNANGT TCGGTTTNTT TGTAATCAAT NAAATNCTGN
    CCCGGGGGGA TTTNTTNTNG GTTTNTTNGT TACCCNTNTN GTTNGCCTNG
    ATTTTATAAC TTNNGNGGGA NCCNNCNACT TNGGANNGNN GGNAAATAAA
    CAANGATANG GGGNTTTAAN CCGANNTTGA NCCAAANTNG TAANCCGNTG
    GGNANATTTT TNACAATNAA ACTTNGGCGG GGNAATTTAN CCAAAAAAAT
    TCCNNCCCAA AANCAAANCT TGGGTTTTNN CTTTGGNAGG GACTTTTNGA
    ACCNANTNTT TCAAAAATNT NNCAAAACCA AATTTTGAAG ATTTCCNNGN
    CCCCCTANAA AATNNCAAAA AANAANTTTT TAAANNTNAN ANNNNGGGCN
    NNNNNCCCCC CNNCCCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555838 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0257-1 - 3-prime edge
    CCTGCGACTC AACCGCAACA GCAACATGAG CAGAAGAAGC AATCAGAGAC 
    TGTTTCATCT GCTGAAGAAG ATGCTTTGAA GTGGAACACC GATTGCGTTT
    ACTTTCTCGC TTCTCCTTTA ACCTGCAAGA AGGTAATTGA TTTTTGATTA
    TTGTTTCGCT TAGATCTTAT CCAGTTTCTG CTTCAATTAG GGTTTTGGAT
    TTGAGATCTC AAGTTTCTTT CACCCGATTT CAAGTTTCTC TGTGTTTTTG
    TGTCCCTCGA AGCTATCTAT ACATACTTCA CTTCTCCATC TGCTTAATTT
    TGGTGCGAGA TTTAGATCTG GTGATTTCGA ACCTCGTGAT TCTAAGTATT
    GTTGTTTCTT AGGGCTTCTT GTTAGCTAGA TTGAAAATTA CATATACAAA
    GCT

AT2G02160.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Link
InterPro Scan - TAIR