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15-0294-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20314264 [Map]; Strand: c
      • AT5G49930.1 - [+] show detail - zinc knuckle (CCHC-type) family protein
        Distance: -1456; Region: intergenic
      • AT5G49940.1 - [+] show detail - NIFU-like protein 2
        Distance: -1134; Region: intergenic
    Flanking Genome Sequence: 15-0294-1 - 5-prime edge
    GNTAAANCAC TNNNNCGTNG ATNGNGTATT CACGTANGTG GANNNGGANT 
    AGNGTANACC AANNCCANNC CGGNGAACTA GGAAAACAAT CAACCGTATG
    GNGTTTAGGA TNNTANGAAG TGAGCCTATA ATTTTTTATG TTTTCCTTAT
    TTTCCTTGAA TGCTNGTTTA CGTTTTCTTA TAAATAAGGA TGTAGTCTCG
    TTTTTGAAAA GCATCCAAGC AATTGAGAGT TTTGGAGGAT TCTGTCGAAT
    TAGGCCGAGG AGAAGAGGAC GTAGTTTCTC TTTGAGGAGT TTTACTCTAA
    TCTTGTTACG CTATCATTTT CTCAGTTTTA ATAAAGAGAG TTTAGAGATT
    ATTTTTGGCT TCTAACAATT GGTCCGACCT AAAGATA

AT5G49930.1

Model type
Protein coding
Short Description
zinc knuckle (CCHC-type) family protein
Computational Description
embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49940.1

Model type
Protein coding
Short Description
NIFU-like protein 2
Curator Summary
Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
Computational Description
NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR