1. Home
  2. Mutant Lines
  3. 15-0337-1

15-0337-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 57809 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0337-1 - 5-prime edge 
    GTCGAGGGAT TCGAAGAGAG CGGTGTGTGA GTGCAGCGAG TGGGCGAGCT 
    GTTGAGAGAA GGGCAGATCC GTCCTCTCGC ATCCTCTGTC GGAGCAGACG 
    ATGATCGTCG GAGATAGATG CTTCACGAAA CGGAGGACCA AAGGGAGGTG 
    CGAGAAGGAC GCNGGCGGAG ATGTTAACGG CGACAGCTTC TTTCTCCGAC 
    GAGTTAGGCC ACGAGATGGA GCCGAGGAGG TCTAAGCTCA AAACTTGGAT 
    GTCAAGGGAG ATGTTGATCT CAGAGGCGAA GTGCTTGAGG TTGTCTTGAG 
    TGAAGCCAAG TTCGAGCTGG TCGTGGTTCG CCGGAGAAGC GAAAACGGTG 
    ATCTTGAGGG AGAGAGGAGC GGCGTTGTCG CGGAGAACAA GCTCTTGCAT 
    GAGGGAAGCC CATTGGCCAC CGTAGCCGAT ATCGAAGTCG ATGATGTGGA 
    GACGGTGGAA GCCATGGAAG GACTCTAAGA GGGCTTGGTT GGAGGTAAAG 
    TTGGCGAACT GAAGAACGGG AGAGATCTCT GAGAAGGATT TGTAAGCAGC 
    GATCTTGAAG ATGAGGGAAT AAGGGTTTAG GGTTTTGGGA AACGTTTGTG 
    AAGGAGATTA TTGANAGCTT NTTTNNAAGT AAAAAGCCTG CTNTTTTCTA 
    ATGGGCTTTC CNNACGGGAG AANANAGCTG TTNATTTGAC CCNCNCCAAT 
    ATTCCCCTNA CCTAANCCNT TTTNGTTCNT TTTGACNTTT GNTGCCTTAA 
    CCANNTNTTT GTNTNNCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3953433 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2831; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3749; Region: intergenic
    2. Chromosome: 3; Position: 13587691 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 3717; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -14109; Region: intergenic
    3. Chromosome: 2; Position: 3616695 [Map]; Strand: w
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon11 (CDS)
    4. Chromosome: 2; Position: 3625990 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon44 (CDS)
    Flanking Genome Sequence: 15-0337-1 - 3-prime edge 
    NNTTGNCCCN GCNGCTCGNN TNAGGNGCNN NGCNAACGCC CTTANGATCC 
    GGATGCAGNT TAAGTTCTTA TACTCAATCA TACACATGAC ATCAAGTCAT 
    ATTCGACTCC AAAACACTAA CCAACCTTCT TCTTGCTNCT CAAAGCTACC 
    ANCCCGGGCC GNCNACCACG CNTGGCCTNN ANNAAGNCNT GCNTTTTTTT 
    TTNTNCANNA TTGNNCCGNC NANNANTGNG CNNGNAGACC AGANANNAGG 
    CACNATAANG NNNGNCNNNN NAGGGGGNCG CNCCNNNCTA CCCGCNNCTC 
    NCNTAANAAN NTNANAAAAA ANNACNNNNT NGATANTANA TTAGTNTGNN 
    TTNNTATTAN TAATTNNTNA NGNATGTATA TGGAAGNTTT TAATTTTGNG 
    CCNGGNGNGG GAGANAGAGA GNNNANNGNN CNGGATNGAG NNGNNAGANA 
    GNNGANNANT NNNTANTGAT CNGNNANGCG NCCCCCNNNA TNGGCNTACN 
    CACCNNNNNC NCCTNGTGAN NTTCTNTCTN TCNNTTCCTC TNNANNNCCG 
    TNCCCACNNN CTCTGTNNNN TNTNTATANT AGTNNTCTCN NTGTNNANTC 
    NNTAGNTNAN TTTTTTTNCT TTTTTTTTNG TTTATGTAAG TNCGTCCCGC 
    TNANANCNAN NCNTACNANN NANGGNNGTN NNATCTTNCG CGGCGTGTNG 
    GNANTNTTGN NGTCTNGTNC GTATNANTTG GNGGCNCGNC NNCNCANNGC 
    CNTNAGCAGA TNCGNGGGTG TNNGTCNCGN GCCTAANCNG NNCCTCNCNC 
    NTATNNTGTG GCANGATTTN NGNTATNNNG TCTTGTNNNN NCNNNNAGGT 
    ANANNCGANG ATANANNAGN NNAGNNGGNG

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR