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15-0351-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8764799 [Map]; Strand: w
      • AT1G24764.1 - [+] show detail - microtubule-associated proteins 70-2
        Distance: -1444; Region: intergenic
      • AT1G24792.1 - [+] show detail
        Distance: -1261; Region: intergenic
    Flanking Genome Sequence: 15-0351-1 - 5-prime edge 
    CTTGGATTCA TATAGAGTTA TGAGATTCGG TTTAACGTAT CATGCGAATC 
    TCAGTGTCTA CTAAATGCAA AAGGAACAAA CGCATATTAT AGATGATAAT 
    ACGGTGATTG GACACATCAC ATAGTTTAAG GCATTACATA TATCGATATA 
    CATAATTAAA TACGTATTAC TTCTAAGGCG TGTAGTAGAA AGACTAGCTG 
    CATATGGCAC CTAATTAATA CACATATGGT TCATGTGAAA TGCTGATATG 
    TATATGGTAT ACCACCACTT TGGTACCATA ATGCAACATC TAAATTCGAG 
    AAACGTACTT TCTTATGAAT ACAACGTTTT GGGCATCATT TAGGGAGAGA 
    TGAACTCCAT TACCCAAAAG TAAAATTATT CTCTCATATT TCGGAGACGT 
    TATATTTGAA GTCCATGCCA TTTTTTAACC TCGTTATTTT TTCATGATAA 
    ACTTTTGTAC CGCCGACTAA GTACTAAGTT TTTGATACCG CAAACTCTTA 
    ACTGTTTNTC AAACCACTGA TTTTTACGAC TNTATTATAG NNTNACNCAT 
    AAATAANAGN NGNCATGTAT TAANNANNNA ACCNTNTTTT ACCGNNNNNN 
    CNTNNCCNNN NNNNNCNGNN GGGGNGAGGG GGNTNNNNNN NGGGNNNAAA 
    NGGAAAAGGG NNNNGGAANA AAGNNNNNGG GANNNNGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8779471 [Map]; Strand: w
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
    2. Chromosome: 1; Position: 8801999 [Map]; Strand: w
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
    3. Chromosome: 1; Position: 8816377 [Map]; Strand: w
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 415; Region: intergenic
      • AT1G25141.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -1301; Region: intergenic
    4. Chromosome: 1; Position: 8830755 [Map]; Strand: w
    Flanking Genome Sequence: 15-0351-1 - 3-prime edge 
    AATCCAAGGT CCACATACTC ACTAGTCACT ACAATTGACT AGTTTATGGT 
    AGCTGAAATT GATCACAACG TACCTAATGC ACGAATCACA CAAGTACGAA 
    AATGGGATCT CTAGGGAAGG AAGAANAATC TTTCTATTAA TGACGAGCCC 
    GCGACTTAGG CGGATTGGAC GGATTACAAA TGATGATTTT TTCAACGAGC 
    ATAAATGGAG TAAGAACGAG CCGATTGTAG ATGAAAGACG AGCTTGAGGC 
    CGAAAGACGA TCTTCCGAGG AANAATAGAG TTTATTCGTT TTATAGCTGA 
    ACCTTGTAAA AGGTTGCCTA CGTACCCTTA NAAAGGGATC AAGCCACACG 
    TAGTTCATAT TGTGATAAAC GAGCTAGGCC ATTATTGGAG GAAGGTCGGC 
    AGGTAATTGA CGAGCCGGCA GATGTGCNAC NAGCTGGATG GCTTCTCGAG 
    ACGTGCGAGT AGGTTAGTTA TTTTGGGCGG GCAGGTCGGC GAGACACTTC 
    GGACGGACGA GTAAACGAGT TACTCAAGAT GGATGGGCGT TGCGTTTCTC 
    AAGTATAGTT TGNGGGGTGA AAAAGCGGAG ATTCNATTGA TTGTNAAGGA 
    TC

AT1G24764.1

Model type
Protein coding
Short Description
microtubule-associated proteins 70-2
Curator Summary
Member of the MAP70 protein family.
Computational Description
microtubule-associated proteins 70-2 (MAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-1 (TAIR:AT1G68060.1); Has 48419 Blast hits to 29383 proteins in 2175 species: Archae - 681; Bacteria - 6937; Metazoa - 23825; Fungi - 4071; Plants - 3202; Viruses - 118; Other Eukaryotes - 9585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24792.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25112.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25141.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G47300.1); Has 7236 Blast hits to 6390 proteins in 1409 species: Archae - 0; Bacteria - 2915; Metazoa - 1; Fungi - 0; Plants - 2305; Viruses - 0; Other Eukaryotes - 2015 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25209.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR