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15-0352-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6319238 [Map]; Strand: w
      • AT1G18360.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0352-1 - 5-prime edge 
    GTAGCAATTA CGACCGTTCC TTTACTTGAA CAGATCATAA ACAAAGAGAA 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12584259 [Map]; Strand: w
      • AT2G29263.1 - [+] show detail - unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 pro...
        Distance: 0; Region: exon1 (CDS)
      • AT2G29270.1 - [+] show detail - pseudogene, similar to short chain alcohol dehydrogenase-like protein, non-co...
        Distance: -243; Region: promoter
    Flanking Genome Sequence: 15-0352-1 - 3-prime edge 
    GNCTGANGAN ACGCANGGTC ANNGACTCTT TTAGGACCTN AGGNTACNCC 
    NTGAAANNTT NCGNNCANNG CNNACNCTTA GCTCANCGTG NNCNAGCGGG 
    AAGACTGAAG ACGTNNTGCN GACAATGTTT ATGTNACATG GTTCGATTCC 
    GGCAGGTNGG ATTGTTAATG TTTTGGTGGN GNTTAACGAN CATCANCNCG 
    GGCNGNGGNC NACGCCTGCT CTTNCTATTA TATAAAGTTA GTGGCNCAAC 
    TTCNATTCTN ATNTCATATG AATGAACTGT CTTTCACGGG AGAAAGGAGA 
    CATGCTNAAG ATANNNCNAA AAGGATNACC ANCCCGGNCC GTNNACCACN 
    CNNGCCGTNT

AT1G18360.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29263.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29270.1

Model type
Pseudogene
Computational Description
pseudogene, similar to short chain alcohol dehydrogenase-like protein, non-consensus CT donor splice site at exon 1; blastp match of 57% identity and 7.4e-29 P-value to GP|28849236|dbj|BAC65128.1||AB104856 short chain alcohol dehydrogenase-like protein {Daucus carota}
Link
InterPro Scan - TAIR