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15-0354-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4361152 [Map]; Strand: w
      • AT1G12790.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 B...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0354-3 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATACTT ACCTAGATTC ACGAGAGGTG ACGAAACTTG 
    ATGATCTGTT GAGACACTGT AGCTTGATCC CGCCGTCGCC ATTGACGAAC 
    CTCCTAGAGT TATAGAAATT CGAAAATCTT GGCGGATGAG GATGACGAAT 
    AATTATCAAA TTTGAATAAT TAATTGTTTT CGTCCCACAT CGCTCTCCGA 
    CTTTGGTTCT CCTAACCGGT TCATGAGTAT ATATAAACCG GTTTTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4361150 [Map]; Strand: w
      • AT1G12790.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 B...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0354-3 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    GTAACCACTC TTCTCTGTTA TCAAAATATC CGATCTACTC AATCGTTAGA 
    GTCTAGGATT TGCAAAATTT TGGTGTCGAT TTTATAGCTG TGATTCAAAT 
    CAAATCTAGG AAACTTGAAT T

AT1G12790.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR