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15-0379-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18977187 [Map]; Strand: w
      • AT2G46200.1 - [+] show detail - unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae ...
        Distance: -316; Region: promoter
      • AT2G46200.2 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -337; Region: promoter
      • AT2G46210.1 - [+] show detail - Fatty acid/sphingolipid desaturase
        Distance: -157; Region: promoter
    Flanking Genome Sequence: 15-0379-1 - 5-prime edge 
    CTCTAGTTTT TCTGAGTCAA CCACTAAAAG AAATTGATAG ACCCACCCAA 
    ACTAATGACA AATTGACATA TTAACATGTA AGACAACCTT GTCAAATGTC 
    ACTGGAGTTT TCCTCTAATC AACAATTCCA TTTATAAAGT TAAAAGGTAA 
    TTAAAACCAG TGGATTTTTT ATTGCTTAAC CATTTAAAAC GGTTCTAAAA 
    ATAAAACACA AGTGTCAAAG ATTCGAACAT CGATTCCAAA ACAGTAAACA 
    AACAAAAAAC ACACACACAA ATATAAGGAA GAGAAGGCGT AGAATCGATT 
    CAGAATCTGT GAATTACGAA TCCATAGAGA GAAAGGTTTT GCATTTGCAA 
    CCTTTCTCAA ATTGGGTTCT GTGCATTTCC TTGCACTTTG GATAATAGGA 
    ACTAAATCTC TTTCTCTGGT TCATCAATGG CGGATCAAAC GAAGAAGAGA 
    TACGTTNCAA GCGAGGATTT GAAAAAACAC ANCAAACCTG GAGATTTATG 
    GATTTCGATT CAGGGGAAGT TTACNACGTT NCCNATTGGG NTAAATNTNA 
    TNCCGGGGGG NGGNNGGGAT TTTNNTNTNN NGGGNNANAN NNNNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18977071 [Map]; Strand: w
      • AT2G46200.1 - [+] show detail - unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae ...
        Distance: -200; Region: promoter
      • AT2G46200.2 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -221; Region: promoter
      • AT2G46210.1 - [+] show detail - Fatty acid/sphingolipid desaturase
        Distance: -273; Region: promoter
    Flanking Genome Sequence: 15-0379-1 - 3-prime edge 
    AACTAGAGTA TCCTCAAGAG CAACTTTAAA GTTGTCAATA ACAGAATAAA 
    ATCACAAAAG CAGGAAAAAG TGGAAAAGTA CTGTTAGTTC TAAACTTTAA 
    AAATTAGCAT CCTATTTTTG TGATTCAATG AACTTTAGTG GCGGATTCAA 
    AACCTTTTAA ATGGGCTTAT ATTTTTCCTA ATGGGCCAAA GTGTATAAAT 
    TTAAAGCCCA ATTATTTCAT AAGCATCTTC TCAACCTCGC GCGCTCTGTT 
    TTGCTTTTGC CGGCGTCGGA TCTCGGCAAA GTCTCCTCCG TAGAAATTAT 
    CTATCTGTAA GTCTCAATTA GTCTCACGAT TATCAACTTC CATGTTGGTA 
    GTGATTTTTT AATCTATAAG CTAACTTCCA TATATCCATT TTTTTTGTTT 
    TCGTTGCTGA GTCTCACATT AGGTTGGGGA ACTGAAATCG CTGGATTTTG 
    GGGTTTTCTG GTAAAAGGGT CTCCNGGANG AATCCGGCGA ATTTTNANCC 
    TNCNAANNCT NCNNNNNNNT GGGNT

AT2G46200.1

Model type
Protein coding
Computational Description
unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 16; Bacteria - 188; Metazoa - 1070; Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes - 1318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46200.2

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46210.1

Model type
Protein coding
Short Description
Fatty acid/sphingolipid desaturase
Computational Description
Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).
Link
InterPro Scan - TAIR