Home
Mutant Lines
15-0383-1

15-0383-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 220811 [Map]; Strand: c
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1068; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1509; Region: intergenic

GATGTCTCGC GATTGATTAT CAAACTTGAA CAGTAGTGTG TATTTGTTTA 
ATATATAATC TATTAGAGTA TCATGGAATT ATTCGGGTGA AATGCGCATT 
TATATCTATC ATAGAAACTA GAATCTTCAC TATCCAAATA GTATATTCCA 
TTTTCTTGCA ACTACGTATT ACTACATTCT GGTTGTCATA TATTTAAGAT 
CGAGTAATAG AAAATTAATC ATCTTCATTG ATGNGAGCCN NACAAAGAGT 
NCAATGNGGG NNGGNTGACA AAGNATGCTN ANNCNNGGGG GGNGNGCAAA 
ANANAAACAA AAGANTNTTT GTCGATANGG AAAAAAAAGG GGGGGGGGGG 
AAAGNGCCCN NCNTCCNACN AANAGGGGGA ANNNCANGGN TTGTGGGGGG 
NNAGGNANAN AAANNNCCCN CACTTTTGTT TTTGTGGNTN GAGAGNAAAN 
CTNNTTTTTT TTTTCNCCCC CCCCCCCCCA NAAGANGNNT CNNNGGGGCN 
NCCCCGGGGG GNNANNNNNN GGGGGNNNGN GNAANNNNGN NNNNNNGGNN 
GNAGAAAAAA GNGGNGTATT GNGGGGGNGG GGGGGGGGGG GGGNACCNNC 
CNCNGGGNGC GGGGGGGANG NGNANNNANA AAAAAAAAAA NAAGGGNGGG 
CGCCCCCCCN GGGAGNGGGG GTNNNNTGGG NGGGGGGTNN CANNCCCNCC 
CCCCCNNGNG GGTNNAGAGG NNNNNNCNNC NNNGGAGGGN GGGGGGGGG

3 prime edge [+] show sequence

Chromosome: 4; Position: 220927 [Map]; Strand: c
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1184; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1393; Region: intergenic

GAGACATCGC ATATACCGAT CGTTATTTGT TTACCATCAA AGCACTATTT 
TGTCCGAAGT AAGTAAATAT AGCAAGTGGC AGTAAAAAAA TAGTAATAAA 
ATTGAAGGCA AGATCAGGAG AGAGCTGGCN TGAAATGAAG GCAAGAAACT 
CGTGAAAATA ATAATTGATC CATCTCTATC CACGAAGCCC TACATAATTT 
AGTAACGCAC CACTTGTGGT TGCATGCACA TTTATTTCCA TAACGACAAA 
ACTTTGTGTT TAATTTTATA AATTATTTCT GTTGGCACAA CACACTCATT 
ATAGCCATAT GTTTGTGTTT ATATTTTCTA TTTTCATAGA AACAATTAAT 
TTAATTTTAG ATGCCCTANA CATTTTTTAA ATGTATATAA TAATAAAATT 
ATAGTATAAA AGTCTATATA TTACCCTAAA TTTTACAAAA CATATACAAT 
CCTAACCAAT GGGATC

AT4G00480.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description: ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00490.1

Model type: Protein coding
Short Description: beta-amylase 2
Curator Summary: Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description: beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR