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15-0398-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7653047 [Map]; Strand: c
      • AT1G21770.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -759; Region: promoter
      • AT1G21780.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G21780.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-0398-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC GGGATTTGGT CCAAATAAAC AGAGTATCTC AGCTTAAACA 
    AACCTAATTC AGTTGTAACC ATCCCATAAG GTACTACTAA TCATCAGCCA 
    ATCATTAACA TCTAAATTAA TATCTTTCAG ATTCCACATA ATTGAATATA 
    GTTCCCACAT AAAAGGTAAT TCACTTTCCT GAAATACCTA ATTCGAGCTC 
    GACAATAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7663155 [Map]; Strand: c
      • AT1G21830.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF7...
        Distance: -547; Region: promoter
    Flanking Genome Sequence: 15-0398-1 - 3-prime edge 
    TGACNNANGC NNGGNCNAAT GAAACGGTAG NAGTCTTTTA CCGACCGTTA 
    CCGACCGTTT TCATCCCTGG TCTTACTAGA TATAGACTCG AACAGATAGT 
    TAGAGAAGGA TGATTGATCG CTTGTGGATC

AT1G21770.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Computational Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT1G77540.1); Has 425 Blast hits to 425 proteins in 193 species: Archae - 10; Bacteria - 360; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21780.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21780.2

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21830.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR