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15-0417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18073460 [Map]; Strand: c
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: -278; Region: promoter
    Flanking Genome Sequence: 15-0417-1 - 5-prime edge
    NTNAAAAACT AACAAAATCG GTTATNCGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCTCTATT CCCCAGAGAG CTAGCTTTTC AGATCTAAAA
    TCAGAATCTG ACGGCTGATA TCCCTCGTGA AAAACACCCC AACCGTCCAG
    ATGCAACTGC TTGCTGGGCC AACGATCCAT TCTCTTTCCC GAAATGGATT
    AATCAATTTA AGCCTTATCA CATGCTGGCC CATTTTCTAA CTCCTCTTTT
    CTTTTTTAAC TTACTTTTCT TTCTTTTAAT ATTTTAGTTG CAGATTCATT
    TTCGAAATCA ACGAAATTTA TGTTTTTTAA TTTTCTGGGT ATCTTAATCG
    CGAGATTTTT TATTTTAATA TCACGCTCGA ATATACAATT CGGAATGTGC
    AGATGTTTTT TTTGAAGGCA ATTTAGAAAA ATAGACAAAA ATCGAACAAA
    CATATATAGA AATAGAGATC TAAATAAAAA CATTTATTTT ATTTCCTCTT
    GGAAACAAGG AAAAAATGAA TTGGGGTGGG TGACGTGGCA GTCATACCCT
    TGCCACACCC TTCCTATACG CATATAAACA GCAGCTGCNA GGANAGAGAG
    ATTTCAAAGT ATTTTCTAGG GTTTCGTTTT TTTTAAANAT TTANAGAGAA
    AAGTGAGTTA TTAAGAGATT CCAATCAAAA TGAGCGGAGA CAACCGGCGG
    TGGNTGAAAG GCGCAAAGGC TCCGTCAAGN GGTTTGANNC CNANAAGGGT
    TNCGGNTTNA TCACTCTGAC AACGGNGGCG AGNATTTTTG GTTNCCATCC
    TNATNAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18073489 [Map]; Strand: c
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: -307; Region: promoter
    Flanking Genome Sequence: 15-0417-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG GTCAATTAAT 
    TTATTTTTAT TTTTTTACTT TGTATGTTGT ATTTTATTTT TTGTTGCAGT
    CAACAACAAC ATTAAAGAAT GACATGCACT GGTCAATATA CTCTTTTCAA
    AATTTTCTCA ATCTTGTGGT CAAAATAAGC ATTAACTTGT TGTTCCACNT
    TTCCACGTAC ATTTTATGAG GCAGATTCAC AAATTTTACC AAACAGTATG
    ATAATTGTAT GAAGTAATTT GAGAAGACTA TTGACCGCAA AGAGATTGTC
    CTTTGTTGGA TATCGATTTT TGAGTATCGA TTACAAAACT AAATTACCAA
    GTAATTAATT TATAAGAGAA ATAGAAAATG AGTAAAATTT AAAAATTATT
    GAGAGATAGA AAATAGATCC CTTTAAATTT AGCTTATAAT TCGAAAAATG
    TGCATGTTTT TATCTTAATC ACTTACCGNG AGAAAGTATA GGAGTAAAAT
    GATGTTATCG TAAAGTGCCA AACAACAAAT CAAACTTGTG CTTANCAAAA
    AAAAAAAAAA AAAAAAAAAG GGNNNTTTTT NAAAAAAAAN NNNAAANCCC
    CCCCCCCNNN AAAAAAAAAA NGGGGGGGNN NNNNNNNCCC C

AT4G38680.1

Model type
Protein coding
Short Description
glycine rich protein 2
Curator Summary
Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.
Computational Description
glycine rich protein 2 (GRP2); FUNCTIONS IN: double-stranded DNA binding, mRNA binding, single-stranded DNA binding, nucleic acid binding; INVOLVED IN: stamen development, vegetative to reproductive phase transition of meristem, response to cold, seed development, DNA duplex unwinding; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: glycine-rich protein 2B (TAIR:AT2G21060.1); Has 150401 Blast hits to 55289 proteins in 3379 species: Archae - 285; Bacteria - 51625; Metazoa - 48133; Fungi - 9113; Plants - 13783; Viruses - 1771; Other Eukaryotes - 25691 (source: NCBI BLink).
Link
InterPro Scan - TAIR