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15-0443-1

15-0443-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 8947540 [Map]; Strand: c
- AT1G25470.1 - [+] show detail - AP2 domain-containing transcription factor family protein
  Distance: -912; Region: promoter
- AT1G25470.2 - [+] show detail - AP2 domain-containing transcription factor family protein
  Distance: -913; Region: promoter
- AT1G25472.1 - [+] show detail - conserved peptide upstream open reading frame 54
  Distance: -912; Region: promoter
- AT1G25480.1 - [+] show detail - Aluminium activated malate transporter family protein
  Distance: -925; Region: promoter

ATATTAAAGT ATGGTTTGGT CATGCGCCAT TAATATGTAT GTCCCTTATC 
ATATACGTCT CCTAATATAG AGACCATTTT GTACTAAAGT TCAAGAGACC 
ACATAGATAA AATTAAAGAA AAGATAACAT ACTNGATAAT TTTCTTAGTA 
ACATGTATAT GTGTACGTAT ACCACAGAAA GAATGATCAA ATTTTAGATT 
TCAGAACGCA AAACAACTTA ACTGGAAGGA AAAGAAAATC TAGTTCTAGT 
CTATATCCCG GAGAGATGCT AATAAGAGTC TTTAACTAGG CTTTGCTCTC 
TGCTTTTGCT TTGGTCTTTT CTTTTCTTAT AAACTAAAAA TCTNTAGAAA 
ACATTCATAC TAAAAAACAA ANGGNNAGAA ACCCNAAAAT TTACTAAACC 
TTATAAAAAA NANCANCCCG GGGGGGTNNT TTNTTATGAC AAAGNNGGAG 
AAGAACTTTT TTGACAGANN NNNTTTTGNA ANTNANANNN NNNCCNNNNG 
GGGNTTNTTT NTTNGGGGNN NNANNANNCN NGGGGNNGNN CNGNGNTNAN 
NAANNTNNGG GNNNCNNCNC CCCNNNTNTT TT

3 prime edge [+] show sequence

Chromosome: 1; Position: 8947656 [Map]; Strand: c
- AT1G25480.1 - [+] show detail - Aluminium activated malate transporter family protein
  Distance: -809; Region: promoter

TTTAATATCA TGCATCTATC ATGTCCCACT AATCGCCTAA GCTATCCATT 
TGGGAGCGTG TGATTCAATC TTTCTCATAA GAAGAACAAT TTTACTGGTA 
TTTTATGCAA GTGTAGTCCT CCACACATAA GATGCTTCTG TTGTATGAAG 
GCAAAGAGCG GATGCAATAA CTTTTTCAAA ATTCGGTAAA AACCTGAACT 
GTGAATCTGT GATTGCAATT TTTTTACAAT GGTGTTGTTG TTCAAATGGT 
GACAGCAAAA CATGAATTAA TAGACTGAAA CGATTTTTTT TCATCTTACC 
ACAAAACAAT TATACACTAT TATACATCAC ATAATAAATG TTATAATTAT 
AAAAAAAACA TGAGTGATAC TATTTTTTAA ACTCTACTCT TCAATTGATA 
GTTATTTTTG CTTGATTTTT TTTTAGCAAA ACAATGATTT AATAAAATAA 
AAAAATNGNG ATNTGCCTAA TATTGGTAAA AAANAAAAAA TATNGNACTT 
TTCAATGNCC TTAAAAATAC AAATTTTTAT GATTNGACTA CTTCCAAATT 
TNTTTAAATG AGTNCAAATT CNAATNTTTA AAATTTNNNN NNAAACAATT 
TNCNTTTTNA ACAANAAACA TNTTTTTTGG ACGGNCNAAN AATGTNGNTT 
TTTNNTNTNN NNNNNAAANN NNNNNCNNTT NNNAANNAAA AAANA

AT1G25470.1

Model type: Protein coding
Short Description: AP2 domain-containing transcription factor family protein
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description: AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 2801 Blast hits to 2801 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2796; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25470.2

Model type: Protein coding
Short Description: AP2 domain-containing transcription factor family protein
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description: AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25472.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 54
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1
Computational Description: conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 53 (TAIR:AT1G68552.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25480.1

Model type: Protein coding
Short Description: Aluminium activated malate transporter family protein
Computational Description: Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G68600.1); Has 866 Blast hits to 864 proteins in 262 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 26; Plants - 341; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR