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15-0458-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2934719 [Map]; Strand: w
      • AT1G09090.1 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon6 (CDS)
      • AT1G09090.2 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-0458-1 - 5-prime edge 
    GAGCCAATGA AAAAGTTTTT CGGAGACGAG AGGCCTGAAA ATTATGGATG 
    GTTCATGAAA GGGACAGACG GGTGGACCGG TGTTACCATG GTGGTTCTTA 
    TGTTAGTGGC CTACGTCTTG GCGCAGTCGT GGTTCAGACG AAACCGGGCA 
    AACCTACCAA AATCGTTGAA ACGATTGACT GGTTTCAACG CATTTTGGTA 
    CTCGCACCAT TTGTTTGTCA TCGTTTATGT TCTTCTCATC GTGCATGGCT 
    ATTTTGTTTA TCTCTCAAAG GAATGGTACC ACAAGACGGT ACGTATACAT 
    ATATTTTTTC TTGCGTCTTG ATTAATCACG AGTGTTCAGA AAATCAGACT 
    AAAAGATCAT ATGATAATTT TTGTTGATGA AAGCATCCTT TGTTATTATT 
    ACCTTTGGAC AGACGTGGAT GTATCTGGCA GTTCCCGTAC TACTATATGC 
    ATTTGAACGA TTGATTCGTG CATTTAAACC AGGTGCCAAG GCTGTCAAGG 
    TTTTGAAGGT ATTTCTATGA TCTGTTCACA ATAATATACA TGCATTCTTG 
    TTATTATANA CAAAAATCAA GGATATAGTT CACTTTTTTA ATTTCTATTG 
    ACATCAAACT GATTTTNAGG TGGCNNNATA TCCANGAAAT GTNCTTTCAN 
    TTTACATGTN NAANCCTAAA GGTTTNANNT NCNCNNNTGG ACNNNACATN 
    TATATTAACT GNTNTNACNN NNACCTTANA ANGGNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2934603 [Map]; Strand: w
      • AT1G09090.1 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon6 (CDS)
      • AT1G09090.2 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-0458-1 - 3-prime edge 
    ATTGGCTCAA ACTCTACATT TTTTGCATGC AGCAAACGCG GGAAATCACA 
    TGCCAGGTGA GATATAGCGT GCAAGCCTAT TCCAACCGCG ATCCCAAATG 
    CAACAACCTG CATGGACATA AAGATTAAGC ATAACCAAAT TATATTGTTA 
    CAAAAGTCGT ATATCTTTTT GTATTCTTCT ACAACAACAA AAAAAACATG 
    GATTATTGGA CAATGAAAAT TATATAATGT GTATAGATAT GATATATATT 
    AATATACATA ATTTACCTTG TGGAAATTGA TATTGTCATC AAATGGAACA 
    ACAGACCCAA TAAGCT

AT1G09090.1

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2; Bacteria - 81; Metazoa - 636; Fungi - 280; Plants - 489; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09090.2

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR