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15-0473-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14590914 [Map]; Strand: c
      • AT2G34650.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0473-1 - 5-prime edge
    GNGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCT GATCAATGTA TATATATATT TTATAGTTAC
    ATGCATTGAC TCTGTTCACA TTTGTTATCT TGTTCTGCAA GAACAGACCT
    GTTCTTATCA TGTCGGTCTT TTCCAGTTCT TTGAATTGTT ATCAAAGAGT
    CTTTTTCAGC CCATCACAAT TTATAAACGT CAATAATTAT GATTTTATTA
    GCTAATGAGT ATTTATTTTG TTTTTGGTTA CAGATTTTAT GCCGCCGAAG
    TTCTAGTGGC GTTAGAATAT CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14590926 [Map]; Strand: c
      • AT2G34650.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0473-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAA 
    TCTTTTTTCA CAATTTTTTT TTTTTNAAAA AAAATCTGNC TTTGCCCNTA
    ATNTTAAATT NTNCAATAAA ATTTGATTTT TTTTNCCTGG CGGAAAAAAG
    GGAAAATCCC CGGNGNGGTT NTCTNTNACG GAAANAGNGT AAATCCCCCC
    CGGNCCANTT TTCCNTANCN ATCCAAAAAA AATGNGNGGC TTCAANCNCA
    CCGTAAANAG NCGGCAAAAA NGGNNGGNCA ACCTTTTNCA AAANCGTTTT
    CNCCATCTNT GCTNTNTNCA TNTTNTTNTT NANCCCAANA CCTTTTTTNT
    CCNCAANTTT NNTCNNAAAA NACAACCNCC GGCTNTTTTT TTCNTNTCCG
    GNTAAACGGC NTAANTAANC TGTNCCAATN TCCCCGGCCC CNNTCCNACC
    CNTGNGGCAA AANTNTCGGA NGGTTAGNCC TTGTTTTTTT CGNNTTCGGA
    TNTNTGCGTA ACCAAAATNT NAGGATCGGG GNGGTTTNAA AAAAAGGAAN
    CTNCCAC

AT2G34650.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.
Computational Description
PINOID (PID); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 93882 Blast hits to 91860 proteins in 2892 species: Archae - 58; Bacteria - 12658; Metazoa - 35611; Fungi - 11097; Plants - 17324; Viruses - 331; Other Eukaryotes - 16803 (source: NCBI BLink).
Link
InterPro Scan - TAIR