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15-0480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
gynoecium (PO:0009062)
  • abnormal (PATO:0000460)
    (Flowers::carpel)

seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flowers::petal)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15710311 [Map]; Strand: w
      • AT4G32551.2 - [+] show detail - LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
        Distance: 0; Region: exon7 (CDS)
      • AT4G32551.1 - [+] show detail - LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 15-0480-1 - 5-prime edge
    ATTAAAAGTG AGATCAATCC CGTGCTCACT CCCAGAACTG CTGTTCCAGA 
    AGGATCGTTG ATTGGAATT

AT4G32551.1

Model type
Protein coding
Short Description
LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
Curator Summary
LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.
Computational Description
LEUNIG (LUG); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LEUNIG_homolog (TAIR:AT2G32700.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32551.2

Model type
Protein coding
Short Description
LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
Curator Summary
LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.
Computational Description
LEUNIG (LUG); FUNCTIONS IN: transcription repressor activity, protein heterodimerization activity; INVOLVED IN: flower development, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LEUNIG_homolog (TAIR:AT2G32700.6).
Link
InterPro Scan - TAIR