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15-0499-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6881466 [Map]; Strand: w
      • AT5G20350.1 - [+] show detail - Ankyrin repeat family protein with DHHC zinc finger domain
        Distance: 196; Region: intergenic
      • AT5G20360.1 - [+] show detail - Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptid...
        Distance: 153; Region: intergenic
    Flanking Genome Sequence: 15-0499-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG CACCAAAATC TTGCTAAGGG CCCAAAAAAA 
    GAAAATGAAA AAAAAAAANA AAAAAAAAAN NATTTNGNGN TTGGGNTTNA 
    ANNNTTNNCC CCCAANNNCA TTTNGGNNNA AAACCCANGN ANNAANGCCC 
    NNCNNCCCCC NGGGGNAAAA AAAAAATNNG NNNNANTTTT TNGTTTCCCC 
    CCCCCCNAAA NNAAGGGGTT NAANNNTNCC CCANNCAAAA AAAANCNTTT 
    TNNTTTTTTT TNGNNNNNAA AANTTNNANT TGGGNNGNCC CNNANNANNA 
    AAAAACCCNN NAAAAAAAAA TTTNGGGGTT NCCNNNNNNN TNAAACCCCA 
    GGGGGTTNCN AAANNGGNAN CCTTTTTNGN TNNGGGNAAA AAAAAAAAAA 
    NCTTNNCNTT NANNNGNCCN ANNANGAAAA AAAAANNTNG GGGNTTTTNA 
    ANAAANCNTN TNNGGGNNAN NNAANGNAAG GGGCNTANCC TTNNCGGGGN 
    NGNANAAANT TTTTTTTTNT TTTNNAANNN AGGGTTAACC CNNAANNNGG 
    NCNAAAAANT TTTNTTNCNT AAAANNNNAA NCCNANAATT TCNGGNAAAT 
    TTTTTTTNNC CNTGGAAANG AACNTNAANC CGGGNNNGGN NCNNCNGGGN 
    CCNTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6881411 [Map]; Strand: w
      • AT5G20350.1 - [+] show detail - Ankyrin repeat family protein with DHHC zinc finger domain
        Distance: 141; Region: intergenic
      • AT5G20360.1 - [+] show detail - Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptid...
        Distance: 208; Region: intergenic
    Flanking Genome Sequence: 15-0499-1 - 3-prime edge 
    GGAGTCAGTC ATTGTCTTGT AATTCGTTGT TACATATAAA ATGTAATGAT 
    GTTTTTGTTA CATATAAGCA AGTAGTATCA GTGTATTGAC GGATACCTCA 
    GCCAGAAAAC ATCATGTACA ACCATTTCTG TTACATTCTG TCTGTCATTG 
    AGTAAACTGA ATT

AT5G20350.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein with DHHC zinc finger domain
Curator Summary
Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth.
Computational Description
TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20360.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Computational Description
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G25290.3); Has 5561 Blast hits to 4736 proteins in 360 species: Archae - 27; Bacteria - 205; Metazoa - 2716; Fungi - 742; Plants - 1032; Viruses - 2; Other Eukaryotes - 837 (source: NCBI BLink).
Link
InterPro Scan - TAIR