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15-0529-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18003608 [Map]; Strand: c
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: -27; Region: promoter
    Flanking Genome Sequence: 15-0529-1 - 5-prime edge 
    NGTNANGCAN NGCNCNCNAG ANACATNCGC TCGNACACNG AGGTGCGGAT 
    ANGCCGGGTC NGANATGCTG ATNGATAATN GAANACNCNA NCATACACAN 
    AGTNANTNAT TGGACNCGTA CAGTAGAAAA CNANNGCAGG CCNGCGGCCA 
    GCCAANNCNA NCANNNNCGT NCTTCGATCT CCTTCTCCAC CAAACCATCT 
    CCTTCCTCCT CCAAATCACC ATTACCAATC TCCAGATTCT CCCCCCCATT 
    CTCCCTAAAC CCCAACAAAT CATCCTCCTC CTCCCGCCGC CGCGGTATCA 
    AATCCAGCTC TCCCTCCTCC ATCTCCGCCG TGCTCAACAC AACCACCAAT 
    GTCACAACCA CTCCCTCTCC NACCAAACCT ACCAAACCCG AAACATTCAT 
    CTCCCGATTC GCTACAGATC AACCCCGCAA AGGCGCTGAT ATCCTCGTCG 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8156019 [Map]; Strand: w
      • AT2G18820.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0529-1 - 3-prime edge 
    GCTGCAAACC ATATGCGGAG GCCATCGGCA TATTTGTGCA AGCCTTGCTT 
    TGTGATTGTG CTTAAACGGT TTCGAGTTTG CCGATCAATG AATTTGATGA 
    TATGATCTGA TGGTATAGGC AGATCTCCAT GCCTACGCNT TGTTTCTTTC 
    TCTCCATAAT GTGTGTATCG TTGCTTCAAA TACATAGCGC AAGAGGAAAC 
    GCNTTTGTAC CTGAGAAGTC TTGTCCTGAA AGAAGGAGGA GCAAAGCAGG 
    AAAGTTGGTT GTGTAGCGGC AAAGAAGAAG TCTTCGGGTT AGTCTATCCC 
    AAATGTGTGA AGAGAAATTG CAGGAGAAGA ACAGATGATC TCTTGACTCA 
    GCTGAGATAT TACAAAGAAC ACAAACAGAG GAGATTCCCC TGTTCCAAGA 
    CGCCATTTTA TCACCGGTTG TTAATCTGTC ATGAGCAGCA AGCCAAGATA 
    TAAACGTGAA TTTAGGCGTA GCTCCGGAGA ACCAGATCGC CTTGTGCCAT 
    TGCTTAACTA ATCCTTGTTC TCTTATCTGA TGCCAAATTT CCGGAGAGAA 
    AAACTTAGCC TTAAACTGAC CCCCAATACT TCGACAAAGA GACCTATCTT 
    GTTCTGTGCA AATACCGCGA CACCGAAGCT

AT2G18820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR