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15-0559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218520 [Map]; Strand: c
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -829; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-0559-1 - 5-prime edge 
    CCTGTTGTTG CTGGTGCCTG TTACTCTTCC TGCAAAAAGT ATTAACCTTC 
    ATATATCCGC AGAATACACA ACATTTATAC TAATTTGCTA TTTTATCAAA 
    TTAAGATTTA AACAATGCTA ATTCAGATGC NTTAAACACN TCTAACAAAG 
    GGAGAGAGAA ATTATCAGAA CGAAGCTCGG ATCGAGAACG AGAAATTGAA 
    GCGCTTACCA ATTGGGGAAA AAGGAGGCCG AGTAGGAACG ATACGACTAG 
    ATCTAGGGAT TTGGAGAGGT GAGCATTTCA AATAACTCTT TCCTCGGCTC 
    GAATTAGTTT TCTTCGGCGT ATTCTTCAGA AGCCAATTAT CTTCGTCGTC 
    TTCTCCAGAG ATATCTAAGA GATCCTTATC CATTTCTAGC TTCTCTTTCG 
    AGCCCAAGAT CTGACGATTA GGAAATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218636 [Map]; Strand: c
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -945; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-0559-1 - 3-prime edge 
    ACAACAGGGA GCAGCCATGC GCTTCAGTTG ATACAGATAG TGTAGGAAAG 
    GAGAATGCTA AAGTTGAATT GCCCAAATTG AGTGTGGAGC GACAACAGAT 
    GAAGAAGAAG AAAAAGAATG CAGGGTTTAA TTTGCGCAAG AGTTTAGCAT 
    GGGATAGAGC TTTTTCAACG GAAGAAGGTG ACTTTTTTTT ACCAATTTCC 
    TGTTAGTAGT AAAGGTCAAA GATTTGGTCT ATGTTACTAA GAATCTTAAG 
    ATGTGTGATA TGGTCATGAA CCAGGTGTTT TGGATTCATC TGAGTTATCT 
    AAAATAACTG GAACTGCTTG CCATCTTGGT GGAGATCGGT TAGCTGCCAT 
    TCAGGAAGAG TACAGAGAGT CAATGTCAGC TTCCAAATGT AATGTTTCAC 
    CAGGACTACA AGCACTTGAA GAAAACTTAT TTAACGACTT GCCTGTGAAT 
    AGTAAAAACA GAGAGAAGAA GCT

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR