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15-0584-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17934807 [Map]; Strand: w
      • AT4G38240.1 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
        Distance: 0; Region: intron2 (CDS)
      • AT4G38240.2 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
        Distance: 0; Region: intron2 (CDS)
      • AT4G38240.3 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
        Distance: 0; Region: intron2 (CDS)
      • AT4G38250.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: -595; Region: promoter
    Flanking Genome Sequence: 15-0584-1 - 5-prime edge 
    CTCGCATTTG ACTAGTGCAA TGGTTCTCAG ATTCGATCTG GAGAAACAAA 
    TGAAAGGCTG TGTATAGATC TTCATCACAC ACCAGGAAAA AATCGAAAT

AT4G38240.1

Model type
Protein coding
Short Description
alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary
Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description
COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 453 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38240.2

Model type
Protein coding
Short Description
alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary
Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description
COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 453 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38240.3

Model type
Protein coding
Short Description
alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary
Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description
COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139).
Link
InterPro Scan - TAIR

AT4G38250.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
Link
InterPro Scan - TAIR